miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19223 5' -52.8 NC_004684.1 + 55609 0.67 0.845204
Target:  5'- gUGGCCuGGUCGgcCCACGggGCCAc---- -3'
miRNA:   3'- -ACCGGuCCAGUa-GGUGC--UGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 60291 0.67 0.845204
Target:  5'- gUGGCCcGGUCcUCgGCGGCCu----- -3'
miRNA:   3'- -ACCGGuCCAGuAGgUGCUGGuaaacu -5'
19223 5' -52.8 NC_004684.1 + 52694 0.67 0.845204
Target:  5'- uUGGCCAGGUCc-UCGCGcCCGUc--- -3'
miRNA:   3'- -ACCGGUCCAGuaGGUGCuGGUAaacu -5'
19223 5' -52.8 NC_004684.1 + 20545 0.67 0.845204
Target:  5'- gGGCCAGGcauUCGUCCA--GCUAUagGAg -3'
miRNA:   3'- aCCGGUCC---AGUAGGUgcUGGUAaaCU- -5'
19223 5' -52.8 NC_004684.1 + 39595 0.67 0.845204
Target:  5'- aGGCCAGGaccgaaCcgCCGCGcACCGUcgGGc -3'
miRNA:   3'- aCCGGUCCa-----GuaGGUGC-UGGUAaaCU- -5'
19223 5' -52.8 NC_004684.1 + 28985 0.67 0.845204
Target:  5'- cGGCCAGGUUcucggucUCCACGccGCCGg---- -3'
miRNA:   3'- aCCGGUCCAGu------AGGUGC--UGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 53534 0.67 0.836379
Target:  5'- aUGGCCAGGUCGgcgcggAUGACCucg-GAg -3'
miRNA:   3'- -ACCGGUCCAGUagg---UGCUGGuaaaCU- -5'
19223 5' -52.8 NC_004684.1 + 54211 0.67 0.836379
Target:  5'- --aCCAGGUCguggcuGUCCugGACCAggUGc -3'
miRNA:   3'- accGGUCCAG------UAGGugCUGGUaaACu -5'
19223 5' -52.8 NC_004684.1 + 63439 0.67 0.836379
Target:  5'- cUGGCCgGGGUCGUCCgguGCGGagaacgucaccuCCAggUGGu -3'
miRNA:   3'- -ACCGG-UCCAGUAGG---UGCU------------GGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 6291 0.67 0.836379
Target:  5'- cUGGCCAgcuccuGGUCcagGUCCACcaGGCCGUacUUGGc -3'
miRNA:   3'- -ACCGGU------CCAG---UAGGUG--CUGGUA--AACU- -5'
19223 5' -52.8 NC_004684.1 + 65912 0.67 0.835485
Target:  5'- gGGCCaccuccggcgcguAGGUC-UCC-CGACCG-UUGAg -3'
miRNA:   3'- aCCGG-------------UCCAGuAGGuGCUGGUaAACU- -5'
19223 5' -52.8 NC_004684.1 + 40223 0.67 0.827336
Target:  5'- gUGGCCAGGUCG-CCGCcguaGCUgg-UGAu -3'
miRNA:   3'- -ACCGGUCCAGUaGGUGc---UGGuaaACU- -5'
19223 5' -52.8 NC_004684.1 + 8996 0.67 0.827336
Target:  5'- cGGCCGGGcCAaggccUCCACGcgcgguGCCGUgcgGGg -3'
miRNA:   3'- aCCGGUCCaGU-----AGGUGC------UGGUAaa-CU- -5'
19223 5' -52.8 NC_004684.1 + 8677 0.67 0.827336
Target:  5'- cGGCCAGGUg--CCuguGGCCGUgcgUGAg -3'
miRNA:   3'- aCCGGUCCAguaGGug-CUGGUAa--ACU- -5'
19223 5' -52.8 NC_004684.1 + 28079 0.67 0.818083
Target:  5'- gUGGCCGGG-CcgCCGCGcgacccgcACCGggUGGu -3'
miRNA:   3'- -ACCGGUCCaGuaGGUGC--------UGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 30802 0.67 0.807676
Target:  5'- gGGCCAccagggucaugccGGUCAUCUGCGGCa---UGAg -3'
miRNA:   3'- aCCGGU-------------CCAGUAGGUGCUGguaaACU- -5'
19223 5' -52.8 NC_004684.1 + 52876 0.67 0.805759
Target:  5'- aGGCCAgGGUCA-CCgucacgugccaccgGCGACCGgcgUGGu -3'
miRNA:   3'- aCCGGU-CCAGUaGG--------------UGCUGGUaa-ACU- -5'
19223 5' -52.8 NC_004684.1 + 47907 0.67 0.798992
Target:  5'- aGGCCAcGGUCGgcggCCuCGGCCAc---- -3'
miRNA:   3'- aCCGGU-CCAGUa---GGuGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 56823 0.67 0.798992
Target:  5'- gUGGCCA--UCGaCCACGACCAccUGGc -3'
miRNA:   3'- -ACCGGUccAGUaGGUGCUGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 16470 0.68 0.789175
Target:  5'- aGGCCGGGcugUCcggCCACGugCAgcUGGc -3'
miRNA:   3'- aCCGGUCC---AGua-GGUGCugGUaaACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.