miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19224 3' -55.7 NC_004684.1 + 51565 0.66 0.793222
Target:  5'- uGUGGcgaugccgcgcGCCACCGGGucgcucgGCGuGGUggUGUGCa -3'
miRNA:   3'- gCACC-----------UGGUGGCCC-------UGU-CCA--ACAUGc -5'
19224 3' -55.7 NC_004684.1 + 28084 0.66 0.764109
Target:  5'- --cGGGCCGCCGcGcGACccgcaccGGGUgGUGCGg -3'
miRNA:   3'- gcaCCUGGUGGC-C-CUG-------UCCAaCAUGC- -5'
19224 3' -55.7 NC_004684.1 + 36317 0.66 0.755138
Target:  5'- gGUGGACCaacaacucGCCGGuGccGCAGuGggUGUACGg -3'
miRNA:   3'- gCACCUGG--------UGGCC-C--UGUC-Ca-ACAUGC- -5'
19224 3' -55.7 NC_004684.1 + 22328 0.66 0.745058
Target:  5'- cCGUGGcccGCCACCcGGuACAGGcgGUgGCGg -3'
miRNA:   3'- -GCACC---UGGUGGcCC-UGUCCaaCA-UGC- -5'
19224 3' -55.7 NC_004684.1 + 13279 0.66 0.745058
Target:  5'- gGUGG-CCGCCGGuGGCuGGUgc-GCGc -3'
miRNA:   3'- gCACCuGGUGGCC-CUGuCCAacaUGC- -5'
19224 3' -55.7 NC_004684.1 + 17555 0.67 0.738957
Target:  5'- --aGGACCGCCuGGACgAGGUgcgcgcacuguaagGUGCa -3'
miRNA:   3'- gcaCCUGGUGGcCCUG-UCCAa-------------CAUGc -5'
19224 3' -55.7 NC_004684.1 + 37685 0.67 0.73487
Target:  5'- gGUGGAUUACCuGGGCcuGUUcGUACGc -3'
miRNA:   3'- gCACCUGGUGGcCCUGucCAA-CAUGC- -5'
19224 3' -55.7 NC_004684.1 + 11182 0.67 0.713169
Target:  5'- aGUGGgucaugACCgACCGGGACGagaacccGGUUgaGUACGa -3'
miRNA:   3'- gCACC------UGG-UGGCCCUGU-------CCAA--CAUGC- -5'
19224 3' -55.7 NC_004684.1 + 3571 0.68 0.672057
Target:  5'- uCGUGGugCGCCacagcgGGGACGuGgaGUACGu -3'
miRNA:   3'- -GCACCugGUGG------CCCUGUcCaaCAUGC- -5'
19224 3' -55.7 NC_004684.1 + 37559 0.68 0.62933
Target:  5'- gGUGGACCcgguguACCGGGAgCuGGagGUGCc -3'
miRNA:   3'- gCACCUGG------UGGCCCU-GuCCaaCAUGc -5'
19224 3' -55.7 NC_004684.1 + 8423 0.68 0.62612
Target:  5'- uGUGGAacccgcgcgcCCGCCGGGcCAGGgaaccugacuccccgGUGCGc -3'
miRNA:   3'- gCACCU----------GGUGGCCCuGUCCaa-------------CAUGC- -5'
19224 3' -55.7 NC_004684.1 + 31892 0.69 0.576032
Target:  5'- gGUGGA-CGCCGGGAC--GUUGUucGCGg -3'
miRNA:   3'- gCACCUgGUGGCCCUGucCAACA--UGC- -5'
19224 3' -55.7 NC_004684.1 + 1378 0.69 0.571802
Target:  5'- gGUGGACagcuCCGGGugGGGcggcggcuaccgGUACGg -3'
miRNA:   3'- gCACCUGgu--GGCCCugUCCaa----------CAUGC- -5'
19224 3' -55.7 NC_004684.1 + 63904 0.71 0.473498
Target:  5'- gGUGGuCCagguACCGGGuaACGGcGUUGUACGc -3'
miRNA:   3'- gCACCuGG----UGGCCC--UGUC-CAACAUGC- -5'
19224 3' -55.7 NC_004684.1 + 55981 0.72 0.425733
Target:  5'- aGUGGGCgGCCGGG-UAGGUgGUcgGCGu -3'
miRNA:   3'- gCACCUGgUGGCCCuGUCCAaCA--UGC- -5'
19224 3' -55.7 NC_004684.1 + 31828 0.73 0.398486
Target:  5'- --aGGgcgacaucGCCACCGGGGCGGGccUGUAUGa -3'
miRNA:   3'- gcaCC--------UGGUGGCCCUGUCCa-ACAUGC- -5'
19224 3' -55.7 NC_004684.1 + 60751 0.73 0.355639
Target:  5'- gGUGG-CCGCCGGGugGGG--GUugGu -3'
miRNA:   3'- gCACCuGGUGGCCCugUCCaaCAugC- -5'
19224 3' -55.7 NC_004684.1 + 36230 0.75 0.272553
Target:  5'- -cUGGcccagcaccGCCGCCGGGuuggugaGCAGGUUGUGCGc -3'
miRNA:   3'- gcACC---------UGGUGGCCC-------UGUCCAACAUGC- -5'
19224 3' -55.7 NC_004684.1 + 44485 1.08 0.00151
Target:  5'- gCGUGGACCACCGGGACAGGUUGUACGu -3'
miRNA:   3'- -GCACCUGGUGGCCCUGUCCAACAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.