miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19224 5' -62.7 NC_004684.1 + 66751 0.66 0.366798
Target:  5'- cGGUGUCcuuggGGUCGCCGUgcucgucggccaGGUcguccaggucaggcGGCCCGg -3'
miRNA:   3'- -UCGCAGaa---CCGGCGGCA------------CCA--------------CCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 64922 0.67 0.364363
Target:  5'- cGGCGaCccaggUGGCgGCgGUgagcgccuggcgggcGGUGGCCCGg -3'
miRNA:   3'- -UCGCaGa----ACCGgCGgCA---------------CCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 47786 0.67 0.361938
Target:  5'- gAGCGUCaccgccagcaccucGGCCGCCGgacugggcaGGUgcacgacgccaGGCCCGg -3'
miRNA:   3'- -UCGCAGaa------------CCGGCGGCa--------CCA-----------CCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 25330 0.67 0.361133
Target:  5'- cGGCGUa-UGGCgGCCuccccGGUGGCCUu -3'
miRNA:   3'- -UCGCAgaACCGgCGGca---CCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 51708 0.67 0.361133
Target:  5'- uGGCGUCgguGCCGCCGc--UGGCCaCGa -3'
miRNA:   3'- -UCGCAGaacCGGCGGCaccACCGG-GC- -5'
19224 5' -62.7 NC_004684.1 + 60593 0.67 0.361133
Target:  5'- cGGCGUCguagUGGCCGUCGUccaGUG-CaCCGg -3'
miRNA:   3'- -UCGCAGa---ACCGGCGGCAc--CACcG-GGC- -5'
19224 5' -62.7 NC_004684.1 + 61693 0.67 0.361133
Target:  5'- uGGCGUC--GG-UGCCGUGGgcaggccgGGCCCc -3'
miRNA:   3'- -UCGCAGaaCCgGCGGCACCa-------CCGGGc -5'
19224 5' -62.7 NC_004684.1 + 16566 0.67 0.359525
Target:  5'- gGGCGUCaucgugaacgcgUGGuaCCGCCGccagcgucugcUGGUGGCCUc -3'
miRNA:   3'- -UCGCAGa-----------ACC--GGCGGC-----------ACCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 61537 0.67 0.345283
Target:  5'- aGGCG-C-UGGCgUGCCGcUGGuUGGUCCGg -3'
miRNA:   3'- -UCGCaGaACCG-GCGGC-ACC-ACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 61340 0.67 0.345283
Target:  5'- cGGCGUaggUGGCgGCCaggugaaugGUGGUGGCguUCGa -3'
miRNA:   3'- -UCGCAga-ACCGgCGG---------CACCACCG--GGC- -5'
19224 5' -62.7 NC_004684.1 + 19480 0.67 0.329938
Target:  5'- aGGUGgcCgaGGCCGCCGaccGUGGCCUGc -3'
miRNA:   3'- -UCGCa-GaaCCGGCGGCac-CACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 65760 0.67 0.329938
Target:  5'- gGGCGU--UGGCCGCCGcgcgccGGUGGgCgCGc -3'
miRNA:   3'- -UCGCAgaACCGGCGGCa-----CCACCgG-GC- -5'
19224 5' -62.7 NC_004684.1 + 27789 0.67 0.322457
Target:  5'- gAGUGggagcGCUG-CGUGGUGGCCCGa -3'
miRNA:   3'- -UCGCagaacCGGCgGCACCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 25233 0.67 0.322457
Target:  5'- cGGCGcUCUcgacccauaGGCCGUgCGUGGUGGCgUCGg -3'
miRNA:   3'- -UCGC-AGAa--------CCGGCG-GCACCACCG-GGC- -5'
19224 5' -62.7 NC_004684.1 + 55297 0.67 0.322457
Target:  5'- uGCGUgaUGGCCGCCGcgcgGGCCa- -3'
miRNA:   3'- uCGCAgaACCGGCGGCaccaCCGGgc -5'
19224 5' -62.7 NC_004684.1 + 66599 0.68 0.310752
Target:  5'- cGCGcacgaccugguUCUUGGCCagcuuggugccugcgGCCuUGGUGGCCaCGa -3'
miRNA:   3'- uCGC-----------AGAACCGG---------------CGGcACCACCGG-GC- -5'
19224 5' -62.7 NC_004684.1 + 45211 0.68 0.307876
Target:  5'- aGGCGguc--GCCGCCGccGUGGCCCu -3'
miRNA:   3'- -UCGCagaacCGGCGGCacCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 57123 0.68 0.307876
Target:  5'- cGGCGUCgcUGGCCaGU--UGGuUGGCCCGc -3'
miRNA:   3'- -UCGCAGa-ACCGG-CGgcACC-ACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 44907 0.68 0.307876
Target:  5'- gAGCGg-UUGGCCGCUGccagGGaaccGGCCUGg -3'
miRNA:   3'- -UCGCagAACCGGCGGCa---CCa---CCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 25062 0.68 0.307876
Target:  5'- aGGUGgccagGGCgGCCGgguUGGUGGCCuCGa -3'
miRNA:   3'- -UCGCagaa-CCGgCGGC---ACCACCGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.