miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19226 3' -55.9 NC_004684.1 + 17099 0.66 0.716398
Target:  5'- cGCGU-GAaGUCGC-CGUCGGGCc-- -3'
miRNA:   3'- cUGCAuCUcCAGCGuGCAGCCCGuau -5'
19226 3' -55.9 NC_004684.1 + 3590 0.67 0.684403
Target:  5'- gGACGUGGAGuacGUCGCGCacUGGGCc-- -3'
miRNA:   3'- -CUGCAUCUC---CAGCGUGcaGCCCGuau -5'
19226 3' -55.9 NC_004684.1 + 65200 0.67 0.684403
Target:  5'- cGGCGUAGuGGcCGUGCGgcaccucgCGGGcCAUGa -3'
miRNA:   3'- -CUGCAUCuCCaGCGUGCa-------GCCC-GUAU- -5'
19226 3' -55.9 NC_004684.1 + 18833 0.67 0.673626
Target:  5'- -uCGUAGAacUCGCAgGUCGGGuCGUGg -3'
miRNA:   3'- cuGCAUCUccAGCGUgCAGCCC-GUAU- -5'
19226 3' -55.9 NC_004684.1 + 65890 0.67 0.630238
Target:  5'- -cCGUAGuGGUCGCGCaacaggCGGGCc-- -3'
miRNA:   3'- cuGCAUCuCCAGCGUGca----GCCCGuau -5'
19226 3' -55.9 NC_004684.1 + 43169 0.69 0.565374
Target:  5'- aGAcCGccGAGGUCGCucggcgcgAUGUCGGGCAc- -3'
miRNA:   3'- -CU-GCauCUCCAGCG--------UGCAGCCCGUau -5'
19226 3' -55.9 NC_004684.1 + 28251 0.69 0.553637
Target:  5'- uGACGUAGAGGUugUGCAgGUUGccgaccccgcgcaGGCGUAc -3'
miRNA:   3'- -CUGCAUCUCCA--GCGUgCAGC-------------CCGUAU- -5'
19226 3' -55.9 NC_004684.1 + 14916 0.69 0.523069
Target:  5'- cGCGcUGGAGGUgguggcggccaUGC-CGUCGGGCAUc -3'
miRNA:   3'- cUGC-AUCUCCA-----------GCGuGCAGCCCGUAu -5'
19226 3' -55.9 NC_004684.1 + 26478 0.71 0.442628
Target:  5'- cGCGUAGucgcaaucggccAGGUCGCAC-UCGGGCc-- -3'
miRNA:   3'- cUGCAUC------------UCCAGCGUGcAGCCCGuau -5'
19226 3' -55.9 NC_004684.1 + 15308 0.72 0.369644
Target:  5'- cGACGUGGccGGUgGCAUGgagCGGGCGUu -3'
miRNA:   3'- -CUGCAUCu-CCAgCGUGCa--GCCCGUAu -5'
19226 3' -55.9 NC_004684.1 + 45482 1.06 0.001732
Target:  5'- uGACGUAGAGGUCGCACGUCGGGCAUAc -3'
miRNA:   3'- -CUGCAUCUCCAGCGUGCAGCCCGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.