miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19227 3' -58.9 NC_004684.1 + 266 0.7 0.319188
Target:  5'- gGC-CGACGGCgaGGCCUUCGUGcacACCUg -3'
miRNA:   3'- aUGaGCUGCCG--CCGGAGGUAC---UGGAg -5'
19227 3' -58.9 NC_004684.1 + 1482 0.66 0.579872
Target:  5'- gUGCcCGguGCGGCGGCCcUgGUGGCCa- -3'
miRNA:   3'- -AUGaGC--UGCCGCCGGaGgUACUGGag -5'
19227 3' -58.9 NC_004684.1 + 2337 0.69 0.393077
Target:  5'- aACU-GGCGGCGGUcauCUCCugggacGACCUCa -3'
miRNA:   3'- aUGAgCUGCCGCCG---GAGGua----CUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 4036 0.69 0.393077
Target:  5'- gGCauggCGACGGUGGCCUaCCggccaucgccggGUGACCg- -3'
miRNA:   3'- aUGa---GCUGCCGCCGGA-GG------------UACUGGag -5'
19227 3' -58.9 NC_004684.1 + 4889 0.68 0.420057
Target:  5'- gGCUCa--GGCGGCCUggucgCCAccGGCCUCg -3'
miRNA:   3'- aUGAGcugCCGCCGGA-----GGUa-CUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 4915 0.66 0.569309
Target:  5'- gUGCUCGA-GGCGGUCgCCAacGGCCa- -3'
miRNA:   3'- -AUGAGCUgCCGCCGGaGGUa-CUGGag -5'
19227 3' -58.9 NC_004684.1 + 6420 0.71 0.304253
Target:  5'- aGCUCGGCGGCGgcgugaacGCCUUCGcgcuUGGCCg- -3'
miRNA:   3'- aUGAGCUGCCGC--------CGGAGGU----ACUGGag -5'
19227 3' -58.9 NC_004684.1 + 8034 0.68 0.438654
Target:  5'- uUACgUCGGCuGGCGGuCCUCCAgcGCCa- -3'
miRNA:   3'- -AUG-AGCUG-CCGCC-GGAGGUacUGGag -5'
19227 3' -58.9 NC_004684.1 + 8980 0.69 0.375728
Target:  5'- aACggCGGgguucCGGCGGCCgggCCAaGGCCUCc -3'
miRNA:   3'- aUGa-GCU-----GCCGCCGGa--GGUaCUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 10489 0.72 0.262686
Target:  5'- gACaCGAUGGCGGCCU---UGGCCUCc -3'
miRNA:   3'- aUGaGCUGCCGCCGGAgguACUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 10958 0.71 0.28986
Target:  5'- --aUCGuggUGGCGGCCUCCuUGACCcCg -3'
miRNA:   3'- augAGCu--GCCGCCGGAGGuACUGGaG- -5'
19227 3' -58.9 NC_004684.1 + 11344 0.82 0.051931
Target:  5'- -cCUUGACGGCGGCCUCCA-GGCC-Ca -3'
miRNA:   3'- auGAGCUGCCGCCGGAGGUaCUGGaG- -5'
19227 3' -58.9 NC_004684.1 + 11373 0.71 0.276006
Target:  5'- gUGC-CGGUGGUGGCgUCCAucgUGGCCUCg -3'
miRNA:   3'- -AUGaGCUGCCGCCGgAGGU---ACUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 11649 0.67 0.487105
Target:  5'- gGCaUCGgccacgccagcACGGCGGCCaaCGUGACCg- -3'
miRNA:   3'- aUG-AGC-----------UGCCGCCGGagGUACUGGag -5'
19227 3' -58.9 NC_004684.1 + 12019 0.68 0.448127
Target:  5'- cGCggCGGCGGUGGCCaaggCCAUgcucGACCa- -3'
miRNA:   3'- aUGa-GCUGCCGCCGGa---GGUA----CUGGag -5'
19227 3' -58.9 NC_004684.1 + 12239 0.7 0.35069
Target:  5'- cGCcCGACGGCGGCgaUCCGgucacguacaUGACCaUCa -3'
miRNA:   3'- aUGaGCUGCCGCCGg-AGGU----------ACUGG-AG- -5'
19227 3' -58.9 NC_004684.1 + 13757 0.67 0.507187
Target:  5'- gUGCUCaACGGCcuGGCgCUCCAggcGACCa- -3'
miRNA:   3'- -AUGAGcUGCCG--CCG-GAGGUa--CUGGag -5'
19227 3' -58.9 NC_004684.1 + 13950 0.66 0.558796
Target:  5'- cACUCG-CGGgGGgcCCUCgGUGACgUCc -3'
miRNA:   3'- aUGAGCuGCCgCC--GGAGgUACUGgAG- -5'
19227 3' -58.9 NC_004684.1 + 16277 0.67 0.487105
Target:  5'- aUGCUCG-CGGCcauGCCUgCCAgucgUGACUUCa -3'
miRNA:   3'- -AUGAGCuGCCGc--CGGA-GGU----ACUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 16354 0.68 0.457712
Target:  5'- cAC-CGGCGGUGGCCgcauccugCCGgugGACCa- -3'
miRNA:   3'- aUGaGCUGCCGCCGGa-------GGUa--CUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.