miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19227 3' -58.9 NC_004684.1 + 46590 0.67 0.51736
Target:  5'- cGCUCGACGGCGGCgaCgGcGGCg-- -3'
miRNA:   3'- aUGAGCUGCCGCCGgaGgUaCUGgag -5'
19227 3' -58.9 NC_004684.1 + 13757 0.67 0.507187
Target:  5'- gUGCUCaACGGCcuGGCgCUCCAggcGACCa- -3'
miRNA:   3'- -AUGAGcUGCCG--CCG-GAGGUa--CUGGag -5'
19227 3' -58.9 NC_004684.1 + 17278 0.67 0.4971
Target:  5'- cUGCUCGGCGGCgcuGGUUUUC-UGGCCg- -3'
miRNA:   3'- -AUGAGCUGCCG---CCGGAGGuACUGGag -5'
19227 3' -58.9 NC_004684.1 + 11649 0.67 0.487105
Target:  5'- gGCaUCGgccacgccagcACGGCGGCCaaCGUGACCg- -3'
miRNA:   3'- aUG-AGC-----------UGCCGCCGGagGUACUGGag -5'
19227 3' -58.9 NC_004684.1 + 42781 0.67 0.487105
Target:  5'- -gUUUGAgCGGCcugccgGGCCUCCAgGGCCUUg -3'
miRNA:   3'- auGAGCU-GCCG------CCGGAGGUaCUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 16277 0.67 0.487105
Target:  5'- aUGCUCG-CGGCcauGCCUgCCAgucgUGACUUCa -3'
miRNA:   3'- -AUGAGCuGCCGc--CGGA-GGU----ACUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 66896 0.67 0.477205
Target:  5'- -cUUCGGC-GCGGCCUUCGgcgcGGCCUUg -3'
miRNA:   3'- auGAGCUGcCGCCGGAGGUa---CUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 58244 0.67 0.477205
Target:  5'- --gUCGuCGGCcaGGCCgagcaucuugaCCAUGGCCUCg -3'
miRNA:   3'- augAGCuGCCG--CCGGa----------GGUACUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 49348 0.67 0.476221
Target:  5'- cGCU-GACGGgaucaGGCCcaggcugUCCAUGGCCUUg -3'
miRNA:   3'- aUGAgCUGCCg----CCGG-------AGGUACUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 23960 0.67 0.467406
Target:  5'- cAC-CGACcuCGGCCUCgCcgGGCCUCg -3'
miRNA:   3'- aUGaGCUGccGCCGGAG-GuaCUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 50329 0.67 0.467406
Target:  5'- cGCcCGGCcaggcgGGCGGCCUCCuUGGCaUCg -3'
miRNA:   3'- aUGaGCUG------CCGCCGGAGGuACUGgAG- -5'
19227 3' -58.9 NC_004684.1 + 16354 0.68 0.457712
Target:  5'- cAC-CGGCGGUGGCCgcauccugCCGgugGACCa- -3'
miRNA:   3'- aUGaGCUGCCGCCGGa-------GGUa--CUGGag -5'
19227 3' -58.9 NC_004684.1 + 65442 0.68 0.457712
Target:  5'- gGCgugCGGCGcGCGGCCaCCGUGcGCCg- -3'
miRNA:   3'- aUGa--GCUGC-CGCCGGaGGUAC-UGGag -5'
19227 3' -58.9 NC_004684.1 + 22184 0.68 0.457712
Target:  5'- cACggCGGCGGCGaccGCCUUCggacuggcgcagGUGGCCUCc -3'
miRNA:   3'- aUGa-GCUGCCGC---CGGAGG------------UACUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 52464 0.68 0.448127
Target:  5'- aUGCcCGACGGCauGGCCgCCAccACCUCc -3'
miRNA:   3'- -AUGaGCUGCCG--CCGGaGGUacUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 44187 0.68 0.448127
Target:  5'- --gUCGccacCGGCGGCCUUgGUGAUgUCg -3'
miRNA:   3'- augAGCu---GCCGCCGGAGgUACUGgAG- -5'
19227 3' -58.9 NC_004684.1 + 12019 0.68 0.448127
Target:  5'- cGCggCGGCGGUGGCCaaggCCAUgcucGACCa- -3'
miRNA:   3'- aUGa-GCUGCCGCCGGa---GGUA----CUGGag -5'
19227 3' -58.9 NC_004684.1 + 63866 0.68 0.448127
Target:  5'- gUGCgCGGUGGCGGCCUUCAUcgGGCC-Ca -3'
miRNA:   3'- -AUGaGCUGCCGCCGGAGGUA--CUGGaG- -5'
19227 3' -58.9 NC_004684.1 + 31281 0.68 0.448127
Target:  5'- cGCaUCGuCGGCGGCUaccgCCGU-ACCUCg -3'
miRNA:   3'- aUG-AGCuGCCGCCGGa---GGUAcUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 29416 0.68 0.448127
Target:  5'- cACcgCGuCGGCaacgauGGCCUCCAggacgaUGGCCUCc -3'
miRNA:   3'- aUGa-GCuGCCG------CCGGAGGU------ACUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.