miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19227 5' -58.1 NC_004684.1 + 15117 0.66 0.602861
Target:  5'- cUUGccGUCACCGGgacgcugggccugauCCACGccaGCGCGCa -3'
miRNA:   3'- -AACuuCAGUGGCC---------------GGUGCca-CGCGUG- -5'
19227 5' -58.1 NC_004684.1 + 44054 0.66 0.598547
Target:  5'- cUUGAGGUCGCCcaGGUaCAgcucgccggUGGUGaCGCACa -3'
miRNA:   3'- -AACUUCAGUGG--CCG-GU---------GCCAC-GCGUG- -5'
19227 5' -58.1 NC_004684.1 + 1807 0.66 0.598547
Target:  5'- -cGAGGUCGCCGGUguCAuCGGccUGCuCGCa -3'
miRNA:   3'- aaCUUCAGUGGCCG--GU-GCC--ACGcGUG- -5'
19227 5' -58.1 NC_004684.1 + 47369 0.66 0.596392
Target:  5'- -cGggGUCuucaggcaccaCGGCCucCGGUGCGguCa -3'
miRNA:   3'- aaCuuCAGug---------GCCGGu-GCCACGCguG- -5'
19227 5' -58.1 NC_004684.1 + 52989 0.66 0.592085
Target:  5'- -cGAAGUCGCUGGCCGaguaaccGUcguccagcgccaccaGCGCGCu -3'
miRNA:   3'- aaCUUCAGUGGCCGGUgc-----CA---------------CGCGUG- -5'
19227 5' -58.1 NC_004684.1 + 34194 0.66 0.587783
Target:  5'- cUGuccGUCGCCauGGCCACGGUGaCG-ACc -3'
miRNA:   3'- aACuu-CAGUGG--CCGGUGCCAC-GCgUG- -5'
19227 5' -58.1 NC_004684.1 + 1126 0.66 0.587783
Target:  5'- -cGAgauGGUCGaCGGCCACGGcaugccggGCGUGCc -3'
miRNA:   3'- aaCU---UCAGUgGCCGGUGCCa-------CGCGUG- -5'
19227 5' -58.1 NC_004684.1 + 61486 0.66 0.586708
Target:  5'- -cGAuGUCGCCgcgcaGGCgGCGGcgcucgaUGCGCGCc -3'
miRNA:   3'- aaCUuCAGUGG-----CCGgUGCC-------ACGCGUG- -5'
19227 5' -58.1 NC_004684.1 + 4479 0.66 0.577054
Target:  5'- ----cGUCACCGGCCAgGGccugGCcCGCc -3'
miRNA:   3'- aacuuCAGUGGCCGGUgCCa---CGcGUG- -5'
19227 5' -58.1 NC_004684.1 + 28242 0.66 0.575984
Target:  5'- -cGGAG-CAcagcgcgguggacCCGGCCAgccUGGUGCGCGa -3'
miRNA:   3'- aaCUUCaGU-------------GGCCGGU---GCCACGCGUg -5'
19227 5' -58.1 NC_004684.1 + 47078 0.66 0.56637
Target:  5'- -cGAuGGcCGCCGccGCCAUGGUgucgGCGCACu -3'
miRNA:   3'- aaCU-UCaGUGGC--CGGUGCCA----CGCGUG- -5'
19227 5' -58.1 NC_004684.1 + 12597 0.66 0.56637
Target:  5'- --aGGGUCAUCGGCUccUGGcGCGCGCu -3'
miRNA:   3'- aacUUCAGUGGCCGGu-GCCaCGCGUG- -5'
19227 5' -58.1 NC_004684.1 + 62676 0.66 0.56637
Target:  5'- -cGAGGUC-CUGGCCGuagcaGGccagaaugaUGCGCGCg -3'
miRNA:   3'- aaCUUCAGuGGCCGGUg----CC---------ACGCGUG- -5'
19227 5' -58.1 NC_004684.1 + 27763 0.66 0.563174
Target:  5'- -aGguGUCGCCcgGGCUguacaccccgcccgACGGUGCGCGg -3'
miRNA:   3'- aaCuuCAGUGG--CCGG--------------UGCCACGCGUg -5'
19227 5' -58.1 NC_004684.1 + 33643 0.66 0.555737
Target:  5'- cUGAGGUCGggggcgucCUGGCCGCGcUGCGUc- -3'
miRNA:   3'- aACUUCAGU--------GGCCGGUGCcACGCGug -5'
19227 5' -58.1 NC_004684.1 + 26063 0.66 0.555737
Target:  5'- -gGccGUCGgCGGUCGCGGUGcCGUAg -3'
miRNA:   3'- aaCuuCAGUgGCCGGUGCCAC-GCGUg -5'
19227 5' -58.1 NC_004684.1 + 47534 0.66 0.555737
Target:  5'- -cGuuGUCugCa-CCACGGUGCGCGg -3'
miRNA:   3'- aaCuuCAGugGccGGUGCCACGCGUg -5'
19227 5' -58.1 NC_004684.1 + 7908 0.66 0.555737
Target:  5'- gUUGggGcCGCUGGCCGCgcaGGUGgUGgACa -3'
miRNA:   3'- -AACuuCaGUGGCCGGUG---CCAC-GCgUG- -5'
19227 5' -58.1 NC_004684.1 + 57391 0.66 0.552558
Target:  5'- ---cAGUCGCuauccaggCGGCCAgcguaucacucgacCGGUGUGCACg -3'
miRNA:   3'- aacuUCAGUG--------GCCGGU--------------GCCACGCGUG- -5'
19227 5' -58.1 NC_004684.1 + 45674 0.66 0.552558
Target:  5'- -aGAGGUUuuuugaccggguagGCCGaGCCaugaccACGGUGuCGCACa -3'
miRNA:   3'- aaCUUCAG--------------UGGC-CGG------UGCCAC-GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.