miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19228 3' -65.1 NC_004684.1 + 57929 0.66 0.295901
Target:  5'- gCCCGCCaGC-UCCagcgcccggaacaCCAGGGCCuccaccauGGCCGu -3'
miRNA:   3'- -GGGCGG-CGuAGGg------------GGUCCUGG--------CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 39568 0.67 0.291846
Target:  5'- gCCCaGCaggaGUcgCCCaCCAGGAgCaGGCCAg -3'
miRNA:   3'- -GGG-CGg---CGuaGGG-GGUCCUgG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 54050 0.67 0.291846
Target:  5'- gCCCGCCGUAggguuaCCagguuuaCCGGGugCGGUg- -3'
miRNA:   3'- -GGGCGGCGUa-----GGg------GGUCCugGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 9272 0.67 0.291846
Target:  5'- gCCgGUCGCGUUgUUCGcGGACCcGGCCAu -3'
miRNA:   3'- -GGgCGGCGUAGgGGGU-CCUGG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 60924 0.67 0.291174
Target:  5'- aCCGCCGCccagcuggucaucAUCCCCUGcGcCuCGGCCAa -3'
miRNA:   3'- gGGCGGCG-------------UAGGGGGUcCuG-GCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 61321 0.67 0.285184
Target:  5'- gCCggGCCGCcgCCCUCGGcGGCguagguggCGGCCAg -3'
miRNA:   3'- gGG--CGGCGuaGGGGGUC-CUG--------GCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 21846 0.67 0.285184
Target:  5'- aCCGaCC-UGUCCCCCGGuGcGCCGGUCGa -3'
miRNA:   3'- gGGC-GGcGUAGGGGGUC-C-UGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 10687 0.67 0.285184
Target:  5'- aCCGCCaGCuucaCCCCCGGGcCCaGCUu -3'
miRNA:   3'- gGGCGG-CGua--GGGGGUCCuGGcCGGu -5'
19228 3' -65.1 NC_004684.1 + 51154 0.67 0.285184
Target:  5'- gCCGCCGa--CUCCUcGGugUGGCCGa -3'
miRNA:   3'- gGGCGGCguaGGGGGuCCugGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 44180 0.67 0.278643
Target:  5'- aCCCGCCGUcgCCaCCGGcGGCCuuggugaugucGGUCAg -3'
miRNA:   3'- -GGGCGGCGuaGGgGGUC-CUGG-----------CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 2033 0.67 0.278643
Target:  5'- aCCGUCGCccugguggCCCUgGGGGCC-GCCAu -3'
miRNA:   3'- gGGCGGCGua------GGGGgUCCUGGcCGGU- -5'
19228 3' -65.1 NC_004684.1 + 9868 0.67 0.278643
Target:  5'- gCCGCCGgAUCCCgacgccgcgCAGGAgCaGGCCGc -3'
miRNA:   3'- gGGCGGCgUAGGGg--------GUCCUgG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 11993 0.67 0.277995
Target:  5'- aCCGaCgGCAUgaCCCCgCAGGACUucgcggcggcgguGGCCAa -3'
miRNA:   3'- gGGC-GgCGUA--GGGG-GUCCUGG-------------CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 12207 0.67 0.272221
Target:  5'- gCCGCCGCcagcggugcGUUCUCCGGGGgugcuuCCGGCa- -3'
miRNA:   3'- gGGCGGCG---------UAGGGGGUCCU------GGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 31733 0.67 0.272221
Target:  5'- uCUCGCCGUccuuuGUCgaCUCCAGGAacgacUCGGCCAc -3'
miRNA:   3'- -GGGCGGCG-----UAG--GGGGUCCU-----GGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 4391 0.67 0.272221
Target:  5'- uCCUGCgcauCGCGUUCCCgGccACCGGCCAc -3'
miRNA:   3'- -GGGCG----GCGUAGGGGgUccUGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 23926 0.67 0.272221
Target:  5'- gCUCGCUGCAUUCCCgGagcugcgcGGACCcGCCu -3'
miRNA:   3'- -GGGCGGCGUAGGGGgU--------CCUGGcCGGu -5'
19228 3' -65.1 NC_004684.1 + 15970 0.67 0.272221
Target:  5'- cCCCGaacuccaGCAguUCCCCaAGGAcgcCCGGCCGa -3'
miRNA:   3'- -GGGCgg-----CGU--AGGGGgUCCU---GGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 45159 0.67 0.26592
Target:  5'- gUCGaCgGCGUCCUCCAGGuccaugaagUCGGCCAc -3'
miRNA:   3'- gGGC-GgCGUAGGGGGUCCu--------GGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 33912 0.67 0.259736
Target:  5'- gCCGCCGCGUCCaCCgCAGc-CCcGCCGa -3'
miRNA:   3'- gGGCGGCGUAGG-GG-GUCcuGGcCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.