miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19228 5' -52.5 NC_004684.1 + 37544 0.66 0.921344
Target:  5'- uGGUGACCgGcgcgUUGGGG---UGCAGCu -3'
miRNA:   3'- -CCACUGGgCa---AGCCCUacuACGUUGc -5'
19228 5' -52.5 NC_004684.1 + 53886 0.66 0.921344
Target:  5'- cGGUGccuuCUCGUg-GGGGUGGuUGUGACGg -3'
miRNA:   3'- -CCACu---GGGCAagCCCUACU-ACGUUGC- -5'
19228 5' -52.5 NC_004684.1 + 23848 0.66 0.915265
Target:  5'- cGGUaccucaCCGUUCGGaGGUGgcGCAGCc -3'
miRNA:   3'- -CCAcug---GGCAAGCC-CUACuaCGUUGc -5'
19228 5' -52.5 NC_004684.1 + 40581 0.66 0.915265
Target:  5'- cGGUGAucUCCGggUCGGuGGUGGU-CAGCa -3'
miRNA:   3'- -CCACU--GGGCa-AGCC-CUACUAcGUUGc -5'
19228 5' -52.5 NC_004684.1 + 33830 0.66 0.902295
Target:  5'- cGGUGuGCCCGgc--GGcgGcgGCAACGg -3'
miRNA:   3'- -CCAC-UGGGCaagcCCuaCuaCGUUGC- -5'
19228 5' -52.5 NC_004684.1 + 48781 0.66 0.89541
Target:  5'- --cGACgCCGggCGGGccgAUGAUGCAGg- -3'
miRNA:   3'- ccaCUG-GGCaaGCCC---UACUACGUUgc -5'
19228 5' -52.5 NC_004684.1 + 53664 0.67 0.88385
Target:  5'- uGGUGgcaccgaccgacagcGCCUGggUCGGGAUGAUcuuCGGCGu -3'
miRNA:   3'- -CCAC---------------UGGGCa-AGCCCUACUAc--GUUGC- -5'
19228 5' -52.5 NC_004684.1 + 38125 0.67 0.880858
Target:  5'- uGGUGAgCUGUcggcggUCGGcGGUGAUGCcuugAAUGg -3'
miRNA:   3'- -CCACUgGGCA------AGCC-CUACUACG----UUGC- -5'
19228 5' -52.5 NC_004684.1 + 33710 0.67 0.8732
Target:  5'- gGGUGuCCaGcgCGGuGGUGGUGCAcaGCGa -3'
miRNA:   3'- -CCACuGGgCaaGCC-CUACUACGU--UGC- -5'
19228 5' -52.5 NC_004684.1 + 35982 0.67 0.857154
Target:  5'- --aGGCCUGgcgcacagUCGGGGUGGUGCccgcCGg -3'
miRNA:   3'- ccaCUGGGCa-------AGCCCUACUACGuu--GC- -5'
19228 5' -52.5 NC_004684.1 + 20480 0.68 0.848778
Target:  5'- -uUGGCCgGUccUGGGG-GAUGCGGCGg -3'
miRNA:   3'- ccACUGGgCAa-GCCCUaCUACGUUGC- -5'
19228 5' -52.5 NC_004684.1 + 170 0.69 0.754237
Target:  5'- cGGUGACCgGguuggUCGGGAccaccaccaaggUGGcccugGCAACGc -3'
miRNA:   3'- -CCACUGGgCa----AGCCCU------------ACUa----CGUUGC- -5'
19228 5' -52.5 NC_004684.1 + 35751 0.7 0.722987
Target:  5'- --cGuCCCGgcgGGGAUGGUGUAGCGc -3'
miRNA:   3'- ccaCuGGGCaagCCCUACUACGUUGC- -5'
19228 5' -52.5 NC_004684.1 + 66342 0.72 0.636538
Target:  5'- cGGUGACgCCGgggCGGGcgGccaggGCGACGc -3'
miRNA:   3'- -CCACUG-GGCaa-GCCCuaCua---CGUUGC- -5'
19228 5' -52.5 NC_004684.1 + 41416 0.72 0.60377
Target:  5'- cGGUGGcguccCCCGU--GGcGGUGGUGCGGCGg -3'
miRNA:   3'- -CCACU-----GGGCAagCC-CUACUACGUUGC- -5'
19228 5' -52.5 NC_004684.1 + 58815 0.72 0.592883
Target:  5'- aGGUGccGCCuCGgaugucCGGGAUGAUGCGGuCGg -3'
miRNA:   3'- -CCAC--UGG-GCaa----GCCCUACUACGUU-GC- -5'
19228 5' -52.5 NC_004684.1 + 64958 0.72 0.582029
Target:  5'- cGGUGGCCCgGUUCaGGucGAUGAccGCGACGc -3'
miRNA:   3'- -CCACUGGG-CAAG-CC--CUACUa-CGUUGC- -5'
19228 5' -52.5 NC_004684.1 + 47036 0.73 0.539101
Target:  5'- gGGUGGCCUGcgCGGuGAcGGUGCAcCGg -3'
miRNA:   3'- -CCACUGGGCaaGCC-CUaCUACGUuGC- -5'
19228 5' -52.5 NC_004684.1 + 62834 0.74 0.476952
Target:  5'- --cGACCgGgugUCGGuGAUGGUGUAGCGg -3'
miRNA:   3'- ccaCUGGgCa--AGCC-CUACUACGUUGC- -5'
19228 5' -52.5 NC_004684.1 + 25640 0.75 0.447226
Target:  5'- cGGUGugCCGUUCGaGA-GcgGCGGCGg -3'
miRNA:   3'- -CCACugGGCAAGCcCUaCuaCGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.