miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19229 3' -55.7 NC_004684.1 + 10090 0.66 0.758526
Target:  5'- cGCCGGGUgCUCagccacACCGGCgacaAGCGCg -3'
miRNA:   3'- -CGGCUCAaGAGgagc--UGGCUG----UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 33461 0.66 0.748499
Target:  5'- cGCUGuGgUCUgCCUCGG-CGGCGGCuGCg -3'
miRNA:   3'- -CGGCuCaAGA-GGAGCUgGCUGUCG-CG- -5'
19229 3' -55.7 NC_004684.1 + 10386 0.66 0.748499
Target:  5'- cGCCGGGUa--CCa-GGCCGcCAGCGUg -3'
miRNA:   3'- -CGGCUCAagaGGagCUGGCuGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 23352 0.66 0.748499
Target:  5'- aGCCGAuc-CUCCagGACCuGAuCAGCGUu -3'
miRNA:   3'- -CGGCUcaaGAGGagCUGG-CU-GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 27174 0.67 0.742429
Target:  5'- gGCCGGGUacguguucgucaagCUCCUggucagCGACagCGAgCAGCGCa -3'
miRNA:   3'- -CGGCUCAa-------------GAGGA------GCUG--GCU-GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 54256 0.67 0.738361
Target:  5'- cGCCGGGacagCUCCUCaGCC---AGCGCc -3'
miRNA:   3'- -CGGCUCaa--GAGGAGcUGGcugUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 60107 0.67 0.736321
Target:  5'- cCCGaAGUUCUCCggaacgaaggugUGACCGGgucGCGCa -3'
miRNA:   3'- cGGC-UCAAGAGGa-----------GCUGGCUgu-CGCG- -5'
19229 3' -55.7 NC_004684.1 + 20404 0.67 0.728121
Target:  5'- gGCCGAGgUCagCCUgGA-CGACuccuGGCGCa -3'
miRNA:   3'- -CGGCUCaAGa-GGAgCUgGCUG----UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 57558 0.67 0.717791
Target:  5'- cGCCGAGcugCgCCggUUGGCCGACAuCGCc -3'
miRNA:   3'- -CGGCUCaa-GaGG--AGCUGGCUGUcGCG- -5'
19229 3' -55.7 NC_004684.1 + 9409 0.67 0.717791
Target:  5'- aCCuuGGUcaUgUCCUCGGCCaGCAGCGUg -3'
miRNA:   3'- cGGc-UCA--AgAGGAGCUGGcUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 45891 0.67 0.717791
Target:  5'- gGCCG-GUgccuuguccUCUgCUUGACCGGC-GCGUu -3'
miRNA:   3'- -CGGCuCA---------AGAgGAGCUGGCUGuCGCG- -5'
19229 3' -55.7 NC_004684.1 + 39274 0.67 0.707382
Target:  5'- cGCCG-GUUCagcgCCUCuAUCGACucGGUGCa -3'
miRNA:   3'- -CGGCuCAAGa---GGAGcUGGCUG--UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 314 0.67 0.707382
Target:  5'- cGCCGAGgccaacgCC-CGcACCGgguACGGCGCg -3'
miRNA:   3'- -CGGCUCaaga---GGaGC-UGGC---UGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 5981 0.67 0.707382
Target:  5'- gGCCGAGcaagUCC-CGGCCuGGCucaGGCGCa -3'
miRNA:   3'- -CGGCUCaag-AGGaGCUGG-CUG---UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 38646 0.67 0.696902
Target:  5'- aCCG-GUUgUCCUCGcACCGcacguCGGUGCc -3'
miRNA:   3'- cGGCuCAAgAGGAGC-UGGCu----GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 39147 0.67 0.692694
Target:  5'- gGCCGGGUccaccgcgcugugCUCCgggugggCGGCCaGGUAGCGCa -3'
miRNA:   3'- -CGGCUCAa------------GAGGa------GCUGG-CUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 41160 0.68 0.686364
Target:  5'- gGCCGA---CUCCaUGAUCGGCuugAGCGCg -3'
miRNA:   3'- -CGGCUcaaGAGGaGCUGGCUG---UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 54611 0.68 0.686364
Target:  5'- uGCCGuuGUcCUCgUUGGCCGcaGGCGCa -3'
miRNA:   3'- -CGGCu-CAaGAGgAGCUGGCugUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 57143 0.68 0.675777
Target:  5'- gGCUG-GUUCgCCUCcauggcggcgguGGCCGAC-GCGCa -3'
miRNA:   3'- -CGGCuCAAGaGGAG------------CUGGCUGuCGCG- -5'
19229 3' -55.7 NC_004684.1 + 55323 0.68 0.675777
Target:  5'- aUCGAGUUCgCCgaCGGCUGGCaggugagccuGGCGCg -3'
miRNA:   3'- cGGCUCAAGaGGa-GCUGGCUG----------UCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.