miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19229 5' -48.3 NC_004684.1 + 26656 0.66 0.989129
Target:  5'- cGGgGUGUCGGAGGUGccGAuCCuCGGg -3'
miRNA:   3'- uUUgCACAGCUUCUACuaCUuGG-GCU- -5'
19229 5' -48.3 NC_004684.1 + 28400 0.66 0.987517
Target:  5'- -uGCGUGaCGccGGUGuUGGACCCGc -3'
miRNA:   3'- uuUGCACaGCuuCUACuACUUGGGCu -5'
19229 5' -48.3 NC_004684.1 + 44347 0.66 0.987517
Target:  5'- cGAUGagGUCGuuGAcGGUGGACCCGu -3'
miRNA:   3'- uUUGCa-CAGCuuCUaCUACUUGGGCu -5'
19229 5' -48.3 NC_004684.1 + 35339 0.66 0.981097
Target:  5'- --cCGUGugcgucaacgccgacUCGGAGAUGGUGGacggcaacguggacuGCCCGGu -3'
miRNA:   3'- uuuGCAC---------------AGCUUCUACUACU---------------UGGGCU- -5'
19229 5' -48.3 NC_004684.1 + 49504 0.67 0.979162
Target:  5'- cGGCGcGUCGggGGUGuagcggcccagcGUGcACCCGGc -3'
miRNA:   3'- uUUGCaCAGCuuCUAC------------UACuUGGGCU- -5'
19229 5' -48.3 NC_004684.1 + 27354 0.67 0.976542
Target:  5'- --cCGUG-CGAGGggGAUcGGCCCGGu -3'
miRNA:   3'- uuuGCACaGCUUCuaCUAcUUGGGCU- -5'
19229 5' -48.3 NC_004684.1 + 23473 0.67 0.97059
Target:  5'- cAGCGUGaCGgcGGUGGUGAccgcuuuccugGCCUGGa -3'
miRNA:   3'- uUUGCACaGCuuCUACUACU-----------UGGGCU- -5'
19229 5' -48.3 NC_004684.1 + 55884 0.68 0.963627
Target:  5'- cGAGCGUGcCGGgagucccagcAGgcGAUGuGCCCGAa -3'
miRNA:   3'- -UUUGCACaGCU----------UCuaCUACuUGGGCU- -5'
19229 5' -48.3 NC_004684.1 + 39362 0.68 0.951148
Target:  5'- cAAugGUGUCGggGAaccagcccuUGuacGGCCCGAu -3'
miRNA:   3'- -UUugCACAGCuuCU---------ACuacUUGGGCU- -5'
19229 5' -48.3 NC_004684.1 + 28677 0.69 0.918359
Target:  5'- uGAACGUGUCcAGGAgGAUGuuGCUCGAc -3'
miRNA:   3'- -UUUGCACAGcUUCUaCUACu-UGGGCU- -5'
19229 5' -48.3 NC_004684.1 + 36712 0.7 0.911854
Target:  5'- uGAGCGUGUCGccuuccAGGUGGUauGCCCGc -3'
miRNA:   3'- -UUUGCACAGCu-----UCUACUAcuUGGGCu -5'
19229 5' -48.3 NC_004684.1 + 5674 0.74 0.739656
Target:  5'- --cCGUgGUCGGAGGUGGccgGGGCCCGGc -3'
miRNA:   3'- uuuGCA-CAGCUUCUACUa--CUUGGGCU- -5'
19229 5' -48.3 NC_004684.1 + 48496 1.07 0.008459
Target:  5'- cAAACGUGUCGAAGAUGAUGAACCCGAu -3'
miRNA:   3'- -UUUGCACAGCUUCUACUACUUGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.