Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1923 | 3' | -56.4 | NC_001347.2 | + | 13522 | 0.67 | 0.896123 |
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Target: 5'- ----cCCGCcGGGCGGCCcGgGCCg-- -3' miRNA: 3'- aaaaaGGUGaCCCGCCGG-CgUGGauc -5' |
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| 1923 | 3' | -56.4 | NC_001347.2 | + | 181059 | 0.67 | 0.882751 |
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Target: 5'- ---gUCCGCgcGGGCGGCaGCAUCcAGa -3' miRNA: 3'- aaaaAGGUGa-CCCGCCGgCGUGGaUC- -5' |
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| 1923 | 3' | -56.4 | NC_001347.2 | + | 77861 | 0.68 | 0.86108 |
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Target: 5'- ----gCUGCUGcaGGUGGCCgaGCGCCUGGg -3' miRNA: 3'- aaaaaGGUGAC--CCGCCGG--CGUGGAUC- -5' |
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| 1923 | 3' | -56.4 | NC_001347.2 | + | 88673 | 0.68 | 0.853446 |
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Target: 5'- ---aUCCACUGGcGcCGGCgCGC-CCUGc -3' miRNA: 3'- aaaaAGGUGACC-C-GCCG-GCGuGGAUc -5' |
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| 1923 | 3' | -56.4 | NC_001347.2 | + | 193677 | 0.68 | 0.845616 |
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Target: 5'- ---cUCCGCUc-GCGGCCGCuACCUAc -3' miRNA: 3'- aaaaAGGUGAccCGCCGGCG-UGGAUc -5' |
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| 1923 | 3' | -56.4 | NC_001347.2 | + | 2458 | 0.69 | 0.794918 |
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Target: 5'- -----gCGCUGGGaCGcGCUGCACCUGc -3' miRNA: 3'- aaaaagGUGACCC-GC-CGGCGUGGAUc -5' |
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| 1923 | 3' | -56.4 | NC_001347.2 | + | 194924 | 0.71 | 0.709813 |
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Target: 5'- ---aUCCGcCUGGGCGGCuCGC-CCg-- -3' miRNA: 3'- aaaaAGGU-GACCCGCCG-GCGuGGauc -5' |
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| 1923 | 3' | -56.4 | NC_001347.2 | + | 81736 | 0.71 | 0.699917 |
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Target: 5'- ----cCCACgaugucGGGCaGGCCGCACCa-- -3' miRNA: 3'- aaaaaGGUGa-----CCCG-CCGGCGUGGauc -5' |
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| 1923 | 3' | -56.4 | NC_001347.2 | + | 76179 | 0.76 | 0.445222 |
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Target: 5'- ------aGCUGGGCGGCCGCACgaAGc -3' miRNA: 3'- aaaaaggUGACCCGCCGGCGUGgaUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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