miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1923 5' -66 NC_001347.2 + 30592 0.68 0.434939
Target:  5'- cGCCGGGCGgcuuccUGcGGCCGgCcGCGGUGc- -3'
miRNA:   3'- aCGGCCCGU------AC-CCGGC-GcCGCCACcu -5'
1923 5' -66 NC_001347.2 + 229644 0.68 0.418696
Target:  5'- gUGCCGGGUGUgucgcGGGCgUGUGGCGGgugugccggcgGGGu -3'
miRNA:   3'- -ACGGCCCGUA-----CCCG-GCGCCGCCa----------CCU- -5'
1923 5' -66 NC_001347.2 + 147897 0.68 0.426771
Target:  5'- aGCCauugGGGcCGUGGGUgGCG-CGGUGGc -3'
miRNA:   3'- aCGG----CCC-GUACCCGgCGCcGCCACCu -5'
1923 5' -66 NC_001347.2 + 97899 0.68 0.434939
Target:  5'- cGUCGucuucGGCGUcGGGCgGCGGCGGUa-- -3'
miRNA:   3'- aCGGC-----CCGUA-CCCGgCGCCGCCAccu -5'
1923 5' -66 NC_001347.2 + 174978 0.68 0.451541
Target:  5'- gUGCUGcaGGUAUuuguggugcGGGCCGUGcCGGUGGAg -3'
miRNA:   3'- -ACGGC--CCGUA---------CCCGGCGCcGCCACCU- -5'
1923 5' -66 NC_001347.2 + 140573 0.68 0.443196
Target:  5'- -uCCGGGCGgcggugcuGGCgGgGGUGGUGGAc -3'
miRNA:   3'- acGGCCCGUac------CCGgCgCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 41674 0.68 0.443196
Target:  5'- cGCUGGGCAcaacGcGGUgaaCGUGGCGcGUGGAu -3'
miRNA:   3'- aCGGCCCGUa---C-CCG---GCGCCGC-CACCU- -5'
1923 5' -66 NC_001347.2 + 229516 0.68 0.443196
Target:  5'- gUGUuuUGGGUGUgucGGGgCGCGGCgGGUGGGu -3'
miRNA:   3'- -ACG--GCCCGUA---CCCgGCGCCG-CCACCU- -5'
1923 5' -66 NC_001347.2 + 65708 0.69 0.37975
Target:  5'- cUGCUGcGCGacacGGUgGCGGCGGUGGAg -3'
miRNA:   3'- -ACGGCcCGUac--CCGgCGCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 16598 0.69 0.395035
Target:  5'- cUGCUGGGUgccGUGGGCucuuacCGCGcCGGUGGu -3'
miRNA:   3'- -ACGGCCCG---UACCCG------GCGCcGCCACCu -5'
1923 5' -66 NC_001347.2 + 173517 0.69 0.39814
Target:  5'- cGUCGGgaacagcggcaagucGCGU-GGCgGCGGCGGUGGu -3'
miRNA:   3'- aCGGCC---------------CGUAcCCGgCGCCGCCACCu -5'
1923 5' -66 NC_001347.2 + 140631 0.69 0.410713
Target:  5'- gGuCUGGGUGgcGGUCGUGGUGGUGGGg -3'
miRNA:   3'- aC-GGCCCGUacCCGGCGCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 229030 0.69 0.402826
Target:  5'- gUGuuGGGCGucUGGGUgaaGCGGCGugguGUGGGu -3'
miRNA:   3'- -ACggCCCGU--ACCCGg--CGCCGC----CACCU- -5'
1923 5' -66 NC_001347.2 + 111981 0.69 0.410713
Target:  5'- gGgCGGGCucUGGgaaGCUGCGGCGGcuUGGGc -3'
miRNA:   3'- aCgGCCCGu-ACC---CGGCGCCGCC--ACCU- -5'
1923 5' -66 NC_001347.2 + 76621 0.7 0.343305
Target:  5'- gGCgGcGGC-UGcGGCCGCGGCGGaGGc -3'
miRNA:   3'- aCGgC-CCGuAC-CCGGCGCCGCCaCCu -5'
1923 5' -66 NC_001347.2 + 2351 0.71 0.296637
Target:  5'- cGCgCGGGCGugcUGGGCgCGCuGGCGcUGGGa -3'
miRNA:   3'- aCG-GCCCGU---ACCCG-GCG-CCGCcACCU- -5'
1923 5' -66 NC_001347.2 + 156648 0.71 0.289768
Target:  5'- cUGCCGGGCcucGGCCGCcgccgccacccauGGCGGcGGGu -3'
miRNA:   3'- -ACGGCCCGuacCCGGCG-------------CCGCCaCCU- -5'
1923 5' -66 NC_001347.2 + 142982 0.71 0.309449
Target:  5'- cGCCcgaggcggaGGaGCcgGcGGCgGCGGUGGUGGAg -3'
miRNA:   3'- aCGG---------CC-CGuaC-CCGgCGCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 1945 0.72 0.265841
Target:  5'- gGCUGGGCugcgcggcgGGGCCggcgacggggacgGCGGCGG-GGAc -3'
miRNA:   3'- aCGGCCCGua-------CCCGG-------------CGCCGCCaCCU- -5'
1923 5' -66 NC_001347.2 + 165086 0.72 0.255048
Target:  5'- gGUCGGGCAgcgGaGGUaaggaaggUGCGGCGGUGGu -3'
miRNA:   3'- aCGGCCCGUa--C-CCG--------GCGCCGCCACCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.