miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1923 5' -66 NC_001347.2 + 77306 0.83 0.047144
Target:  5'- cGUacuUGGGCGUGGGCCGCGGC-GUGGAu -3'
miRNA:   3'- aCG---GCCCGUACCCGGCGCCGcCACCU- -5'
1923 5' -66 NC_001347.2 + 40394 0.78 0.108432
Target:  5'- cGCCGGuGCG-GGGCCGCG-UGGUGGGu -3'
miRNA:   3'- aCGGCC-CGUaCCCGGCGCcGCCACCU- -5'
1923 5' -66 NC_001347.2 + 47116 0.77 0.116518
Target:  5'- aUGCCGauGGUAUGGGCgGCGGCGGcaaUGGc -3'
miRNA:   3'- -ACGGC--CCGUACCCGgCGCCGCC---ACCu -5'
1923 5' -66 NC_001347.2 + 166052 0.77 0.125163
Target:  5'- gUGUCGGGCGUcaugcGGaGUCGCGGCGGUuGGGg -3'
miRNA:   3'- -ACGGCCCGUA-----CC-CGGCGCCGCCA-CCU- -5'
1923 5' -66 NC_001347.2 + 13524 0.76 0.151197
Target:  5'- cGCCGGGCGgcccGGGCCGCcGUGcUGGAg -3'
miRNA:   3'- aCGGCCCGUa---CCCGGCGcCGCcACCU- -5'
1923 5' -66 NC_001347.2 + 136106 0.74 0.186287
Target:  5'- cGCCGGGCcucGGCCGgGGagGGUGGGg -3'
miRNA:   3'- aCGGCCCGuacCCGGCgCCg-CCACCU- -5'
1923 5' -66 NC_001347.2 + 165086 0.72 0.255048
Target:  5'- gGUCGGGCAgcgGaGGUaaggaaggUGCGGCGGUGGu -3'
miRNA:   3'- aCGGCCCGUa--C-CCG--------GCGCCGCCACCu -5'
1923 5' -66 NC_001347.2 + 1945 0.72 0.265841
Target:  5'- gGCUGGGCugcgcggcgGGGCCggcgacggggacgGCGGCGG-GGAc -3'
miRNA:   3'- aCGGCCCGua-------CCCGG-------------CGCCGCCaCCU- -5'
1923 5' -66 NC_001347.2 + 156648 0.71 0.289768
Target:  5'- cUGCCGGGCcucGGCCGCcgccgccacccauGGCGGcGGGu -3'
miRNA:   3'- -ACGGCCCGuacCCGGCG-------------CCGCCaCCU- -5'
1923 5' -66 NC_001347.2 + 2351 0.71 0.296637
Target:  5'- cGCgCGGGCGugcUGGGCgCGCuGGCGcUGGGa -3'
miRNA:   3'- aCG-GCCCGU---ACCCG-GCG-CCGCcACCU- -5'
1923 5' -66 NC_001347.2 + 142982 0.71 0.309449
Target:  5'- cGCCcgaggcggaGGaGCcgGcGGCgGCGGUGGUGGAg -3'
miRNA:   3'- aCGG---------CC-CGuaC-CCGgCGCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 76621 0.7 0.343305
Target:  5'- gGCgGcGGC-UGcGGCCGCGGCGGaGGc -3'
miRNA:   3'- aCGgC-CCGuAC-CCGGCGCCGCCaCCu -5'
1923 5' -66 NC_001347.2 + 65708 0.69 0.37975
Target:  5'- cUGCUGcGCGacacGGUgGCGGCGGUGGAg -3'
miRNA:   3'- -ACGGCcCGUac--CCGgCGCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 16598 0.69 0.395035
Target:  5'- cUGCUGGGUgccGUGGGCucuuacCGCGcCGGUGGu -3'
miRNA:   3'- -ACGGCCCG---UACCCG------GCGCcGCCACCu -5'
1923 5' -66 NC_001347.2 + 173517 0.69 0.39814
Target:  5'- cGUCGGgaacagcggcaagucGCGU-GGCgGCGGCGGUGGu -3'
miRNA:   3'- aCGGCC---------------CGUAcCCGgCGCCGCCACCu -5'
1923 5' -66 NC_001347.2 + 229030 0.69 0.402826
Target:  5'- gUGuuGGGCGucUGGGUgaaGCGGCGugguGUGGGu -3'
miRNA:   3'- -ACggCCCGU--ACCCGg--CGCCGC----CACCU- -5'
1923 5' -66 NC_001347.2 + 111981 0.69 0.410713
Target:  5'- gGgCGGGCucUGGgaaGCUGCGGCGGcuUGGGc -3'
miRNA:   3'- aCgGCCCGu-ACC---CGGCGCCGCC--ACCU- -5'
1923 5' -66 NC_001347.2 + 140631 0.69 0.410713
Target:  5'- gGuCUGGGUGgcGGUCGUGGUGGUGGGg -3'
miRNA:   3'- aC-GGCCCGUacCCGGCGCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 229644 0.68 0.418696
Target:  5'- gUGCCGGGUGUgucgcGGGCgUGUGGCGGgugugccggcgGGGu -3'
miRNA:   3'- -ACGGCCCGUA-----CCCG-GCGCCGCCa----------CCU- -5'
1923 5' -66 NC_001347.2 + 165 0.68 0.418696
Target:  5'- gUGCCGGGUGUgucgcGGGCgUGUGGCGGgugugccggcgGGGu -3'
miRNA:   3'- -ACGGCCCGUA-----CCCG-GCGCCGCCa----------CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.