miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1923 5' -66 NC_001347.2 + 36 0.66 0.566697
Target:  5'- gUGUuuUGGGUGUgucGGGgCGCGGCcgGGUGGGu -3'
miRNA:   3'- -ACG--GCCCGUA---CCCgGCGCCG--CCACCU- -5'
1923 5' -66 NC_001347.2 + 165 0.68 0.418696
Target:  5'- gUGCCGGGUGUgucgcGGGCgUGUGGCGGgugugccggcgGGGu -3'
miRNA:   3'- -ACGGCCCGUA-----CCCG-GCGCCGCCa----------CCU- -5'
1923 5' -66 NC_001347.2 + 1630 0.67 0.477077
Target:  5'- gGCUGGGCGUGGGCacccCGCGcGCGa---- -3'
miRNA:   3'- aCGGCCCGUACCCG----GCGC-CGCcaccu -5'
1923 5' -66 NC_001347.2 + 1731 0.67 0.521139
Target:  5'- cGCCGGcgGUGGGCCGgcaCGaCGGUGGc -3'
miRNA:   3'- aCGGCCcgUACCCGGC---GCcGCCACCu -5'
1923 5' -66 NC_001347.2 + 1945 0.72 0.265841
Target:  5'- gGCUGGGCugcgcggcgGGGCCggcgacggggacgGCGGCGG-GGAc -3'
miRNA:   3'- aCGGCCCGua-------CCCGG-------------CGCCGCCaCCU- -5'
1923 5' -66 NC_001347.2 + 2351 0.71 0.296637
Target:  5'- cGCgCGGGCGugcUGGGCgCGCuGGCGcUGGGa -3'
miRNA:   3'- aCG-GCCCGU---ACCCG-GCG-CCGCcACCU- -5'
1923 5' -66 NC_001347.2 + 8175 0.66 0.530146
Target:  5'- aUGCCGGug--GGGCCGggaCGG-GGUGGGa -3'
miRNA:   3'- -ACGGCCcguaCCCGGC---GCCgCCACCU- -5'
1923 5' -66 NC_001347.2 + 13524 0.76 0.151197
Target:  5'- cGCCGGGCGgcccGGGCCGCcGUGcUGGAg -3'
miRNA:   3'- aCGGCCCGUa---CCCGGCGcCGCcACCU- -5'
1923 5' -66 NC_001347.2 + 16598 0.69 0.395035
Target:  5'- cUGCUGGGUgccGUGGGCucuuacCGCGcCGGUGGu -3'
miRNA:   3'- -ACGGCCCG---UACCCG------GCGCcGCCACCu -5'
1923 5' -66 NC_001347.2 + 30592 0.68 0.434939
Target:  5'- cGCCGGGCGgcuuccUGcGGCCGgCcGCGGUGc- -3'
miRNA:   3'- aCGGCCCGU------AC-CCGGC-GcCGCCACcu -5'
1923 5' -66 NC_001347.2 + 40394 0.78 0.108432
Target:  5'- cGCCGGuGCG-GGGCCGCG-UGGUGGGu -3'
miRNA:   3'- aCGGCC-CGUaCCCGGCGCcGCCACCU- -5'
1923 5' -66 NC_001347.2 + 41158 0.67 0.485748
Target:  5'- cGCgCGGaaAUccGCCGCGGCGGUGGc -3'
miRNA:   3'- aCG-GCCcgUAccCGGCGCCGCCACCu -5'
1923 5' -66 NC_001347.2 + 41674 0.68 0.443196
Target:  5'- cGCUGGGCAcaacGcGGUgaaCGUGGCGcGUGGAu -3'
miRNA:   3'- aCGGCCCGUa---C-CCG---GCGCCGC-CACCU- -5'
1923 5' -66 NC_001347.2 + 44031 0.66 0.575942
Target:  5'- cGCgGuGGCGacGGCaGCGGUGGUGGc -3'
miRNA:   3'- aCGgC-CCGUacCCGgCGCCGCCACCu -5'
1923 5' -66 NC_001347.2 + 47116 0.77 0.116518
Target:  5'- aUGCCGauGGUAUGGGCgGCGGCGGcaaUGGc -3'
miRNA:   3'- -ACGGC--CCGUACCCGgCGCCGCC---ACCu -5'
1923 5' -66 NC_001347.2 + 56238 0.66 0.53921
Target:  5'- gUGCCGcaCAa-GGCCGUGGCGGUaGGGu -3'
miRNA:   3'- -ACGGCccGUacCCGGCGCCGCCA-CCU- -5'
1923 5' -66 NC_001347.2 + 65708 0.69 0.37975
Target:  5'- cUGCUGcGCGacacGGUgGCGGCGGUGGAg -3'
miRNA:   3'- -ACGGCcCGUac--CCGgCGCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 75404 0.67 0.485748
Target:  5'- aGCgGGaGCGgcGGCCGUGGCGGcGGc -3'
miRNA:   3'- aCGgCC-CGUacCCGGCGCCGCCaCCu -5'
1923 5' -66 NC_001347.2 + 76621 0.7 0.343305
Target:  5'- gGCgGcGGC-UGcGGCCGCGGCGGaGGc -3'
miRNA:   3'- aCGgC-CCGuAC-CCGGCGCCGCCaCCu -5'
1923 5' -66 NC_001347.2 + 77306 0.83 0.047144
Target:  5'- cGUacuUGGGCGUGGGCCGCGGC-GUGGAu -3'
miRNA:   3'- aCG---GCCCGUACCCGGCGCCGcCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.