Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1923 | 5' | -66 | NC_001347.2 | + | 78348 | 0.66 | 0.566697 |
Target: 5'- gGuCCGGGCggacccggcgugGUGGGaCCcgGCGGCgccguGGUGGGa -3' miRNA: 3'- aC-GGCCCG------------UACCC-GG--CGCCG-----CCACCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 82693 | 0.67 | 0.503308 |
Target: 5'- aGCUggucccgaacaGGGUGUacGGGUgGUGGCGGUGGu -3' miRNA: 3'- aCGG-----------CCCGUA--CCCGgCGCCGCCACCu -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 97899 | 0.68 | 0.434939 |
Target: 5'- cGUCGucuucGGCGUcGGGCgGCGGCGGUa-- -3' miRNA: 3'- aCGGC-----CCGUA-CCCGgCGCCGCCAccu -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 106218 | 0.67 | 0.485748 |
Target: 5'- cGCCGGcCAcGagccagacgaGGCgGCGGCGGUGGc -3' miRNA: 3'- aCGGCCcGUaC----------CCGgCGCCGCCACCu -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 111981 | 0.69 | 0.410713 |
Target: 5'- gGgCGGGCucUGGgaaGCUGCGGCGGcuUGGGc -3' miRNA: 3'- aCgGCCCGu-ACC---CGGCGCCGCC--ACCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 135863 | 0.66 | 0.548326 |
Target: 5'- gGCCGGaGCccgGGGaggaGCGG-GGUGGGg -3' miRNA: 3'- aCGGCC-CGua-CCCgg--CGCCgCCACCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 135965 | 0.67 | 0.517552 |
Target: 5'- gGCCGGGCcgucggauggggGGGUCgaGCGGgGGgaggGGAg -3' miRNA: 3'- aCGGCCCGua----------CCCGG--CGCCgCCa---CCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 136106 | 0.74 | 0.186287 |
Target: 5'- cGCCGGGCcucGGCCGgGGagGGUGGGg -3' miRNA: 3'- aCGGCCCGuacCCGGCgCCg-CCACCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 140573 | 0.68 | 0.443196 |
Target: 5'- -uCCGGGCGgcggugcuGGCgGgGGUGGUGGAc -3' miRNA: 3'- acGGCCCGUac------CCGgCgCCGCCACCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 140631 | 0.69 | 0.410713 |
Target: 5'- gGuCUGGGUGgcGGUCGUGGUGGUGGGg -3' miRNA: 3'- aC-GGCCCGUacCCGGCGCCGCCACCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 140670 | 0.66 | 0.585221 |
Target: 5'- -uCCGGGgGaaugaUGGGgCGCGGCGGUcgcauguuGGGc -3' miRNA: 3'- acGGCCCgU-----ACCCgGCGCCGCCA--------CCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 142982 | 0.71 | 0.309449 |
Target: 5'- cGCCcgaggcggaGGaGCcgGcGGCgGCGGUGGUGGAg -3' miRNA: 3'- aCGG---------CC-CGuaC-CCGgCGCCGCCACCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 147897 | 0.68 | 0.426771 |
Target: 5'- aGCCauugGGGcCGUGGGUgGCG-CGGUGGc -3' miRNA: 3'- aCGG----CCC-GUACCCGgCGCcGCCACCu -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 156648 | 0.71 | 0.289768 |
Target: 5'- cUGCCGGGCcucGGCCGCcgccgccacccauGGCGGcGGGu -3' miRNA: 3'- -ACGGCCCGuacCCGGCG-------------CCGCCaCCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 165086 | 0.72 | 0.255048 |
Target: 5'- gGUCGGGCAgcgGaGGUaaggaaggUGCGGCGGUGGu -3' miRNA: 3'- aCGGCCCGUa--C-CCG--------GCGCCGCCACCu -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 166052 | 0.77 | 0.125163 |
Target: 5'- gUGUCGGGCGUcaugcGGaGUCGCGGCGGUuGGGg -3' miRNA: 3'- -ACGGCCCGUA-----CC-CGGCGCCGCCA-CCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 173517 | 0.69 | 0.39814 |
Target: 5'- cGUCGGgaacagcggcaagucGCGU-GGCgGCGGCGGUGGu -3' miRNA: 3'- aCGGCC---------------CGUAcCCGgCGCCGCCACCu -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 173652 | 0.67 | 0.512192 |
Target: 5'- cGuCUGGGag-GaGGUgGCGGCGGUGGc -3' miRNA: 3'- aC-GGCCCguaC-CCGgCGCCGCCACCu -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 174978 | 0.68 | 0.451541 |
Target: 5'- gUGCUGcaGGUAUuuguggugcGGGCCGUGcCGGUGGAg -3' miRNA: 3'- -ACGGC--CCGUA---------CCCGGCGCcGCCACCU- -5' |
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1923 | 5' | -66 | NC_001347.2 | + | 184961 | 0.67 | 0.485748 |
Target: 5'- gGCgUGGGCGgcucgcggagacUGGGCUGCaGGCGGcagcGGAu -3' miRNA: 3'- aCG-GCCCGU------------ACCCGGCG-CCGCCa---CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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