Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1923 | 5' | -66 | NC_001347.2 | + | 185360 | 0.67 | 0.512192 |
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Target: 5'- cGCCGccGUggGGGCCGCGGagGGaGGAg -3' miRNA: 3'- aCGGCc-CGuaCCCGGCGCCg-CCaCCU- -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 199323 | 0.66 | 0.551986 |
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Target: 5'- gGCC-GGCAUGGGUaugcauucguugagGCGGCGGaGGu -3' miRNA: 3'- aCGGcCCGUACCCGg-------------CGCCGCCaCCu -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 209736 | 0.66 | 0.585221 |
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Target: 5'- cUGCCGGaGCAccgUGGGUgcCGGCGGUa-- -3' miRNA: 3'- -ACGGCC-CGU---ACCCGgcGCCGCCAccu -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 229030 | 0.69 | 0.402826 |
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Target: 5'- gUGuuGGGCGucUGGGUgaaGCGGCGugguGUGGGu -3' miRNA: 3'- -ACggCCCGU--ACCCGg--CGCCGC----CACCU- -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 229516 | 0.68 | 0.443196 |
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Target: 5'- gUGUuuUGGGUGUgucGGGgCGCGGCgGGUGGGu -3' miRNA: 3'- -ACG--GCCCGUA---CCCgGCGCCG-CCACCU- -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 229644 | 0.68 | 0.418696 |
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Target: 5'- gUGCCGGGUGUgucgcGGGCgUGUGGCGGgugugccggcgGGGu -3' miRNA: 3'- -ACGGCCCGUA-----CCCG-GCGCCGCCa----------CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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