miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1923 5' -66 NC_001347.2 + 229644 0.68 0.418696
Target:  5'- gUGCCGGGUGUgucgcGGGCgUGUGGCGGgugugccggcgGGGu -3'
miRNA:   3'- -ACGGCCCGUA-----CCCG-GCGCCGCCa----------CCU- -5'
1923 5' -66 NC_001347.2 + 229516 0.68 0.443196
Target:  5'- gUGUuuUGGGUGUgucGGGgCGCGGCgGGUGGGu -3'
miRNA:   3'- -ACG--GCCCGUA---CCCgGCGCCG-CCACCU- -5'
1923 5' -66 NC_001347.2 + 229030 0.69 0.402826
Target:  5'- gUGuuGGGCGucUGGGUgaaGCGGCGugguGUGGGu -3'
miRNA:   3'- -ACggCCCGU--ACCCGg--CGCCGC----CACCU- -5'
1923 5' -66 NC_001347.2 + 209736 0.66 0.585221
Target:  5'- cUGCCGGaGCAccgUGGGUgcCGGCGGUa-- -3'
miRNA:   3'- -ACGGCC-CGU---ACCCGgcGCCGCCAccu -5'
1923 5' -66 NC_001347.2 + 199323 0.66 0.551986
Target:  5'- gGCC-GGCAUGGGUaugcauucguugagGCGGCGGaGGu -3'
miRNA:   3'- aCGGcCCGUACCCGg-------------CGCCGCCaCCu -5'
1923 5' -66 NC_001347.2 + 185360 0.67 0.512192
Target:  5'- cGCCGccGUggGGGCCGCGGagGGaGGAg -3'
miRNA:   3'- aCGGCc-CGuaCCCGGCGCCg-CCaCCU- -5'
1923 5' -66 NC_001347.2 + 184961 0.67 0.485748
Target:  5'- gGCgUGGGCGgcucgcggagacUGGGCUGCaGGCGGcagcGGAu -3'
miRNA:   3'- aCG-GCCCGU------------ACCCGGCG-CCGCCa---CCU- -5'
1923 5' -66 NC_001347.2 + 174978 0.68 0.451541
Target:  5'- gUGCUGcaGGUAUuuguggugcGGGCCGUGcCGGUGGAg -3'
miRNA:   3'- -ACGGC--CCGUA---------CCCGGCGCcGCCACCU- -5'
1923 5' -66 NC_001347.2 + 173652 0.67 0.512192
Target:  5'- cGuCUGGGag-GaGGUgGCGGCGGUGGc -3'
miRNA:   3'- aC-GGCCCguaC-CCGgCGCCGCCACCu -5'
1923 5' -66 NC_001347.2 + 173517 0.69 0.39814
Target:  5'- cGUCGGgaacagcggcaagucGCGU-GGCgGCGGCGGUGGu -3'
miRNA:   3'- aCGGCC---------------CGUAcCCGgCGCCGCCACCu -5'
1923 5' -66 NC_001347.2 + 166052 0.77 0.125163
Target:  5'- gUGUCGGGCGUcaugcGGaGUCGCGGCGGUuGGGg -3'
miRNA:   3'- -ACGGCCCGUA-----CC-CGGCGCCGCCA-CCU- -5'
1923 5' -66 NC_001347.2 + 165086 0.72 0.255048
Target:  5'- gGUCGGGCAgcgGaGGUaaggaaggUGCGGCGGUGGu -3'
miRNA:   3'- aCGGCCCGUa--C-CCG--------GCGCCGCCACCu -5'
1923 5' -66 NC_001347.2 + 156648 0.71 0.289768
Target:  5'- cUGCCGGGCcucGGCCGCcgccgccacccauGGCGGcGGGu -3'
miRNA:   3'- -ACGGCCCGuacCCGGCG-------------CCGCCaCCU- -5'
1923 5' -66 NC_001347.2 + 147897 0.68 0.426771
Target:  5'- aGCCauugGGGcCGUGGGUgGCG-CGGUGGc -3'
miRNA:   3'- aCGG----CCC-GUACCCGgCGCcGCCACCu -5'
1923 5' -66 NC_001347.2 + 142982 0.71 0.309449
Target:  5'- cGCCcgaggcggaGGaGCcgGcGGCgGCGGUGGUGGAg -3'
miRNA:   3'- aCGG---------CC-CGuaC-CCGgCGCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 140670 0.66 0.585221
Target:  5'- -uCCGGGgGaaugaUGGGgCGCGGCGGUcgcauguuGGGc -3'
miRNA:   3'- acGGCCCgU-----ACCCgGCGCCGCCA--------CCU- -5'
1923 5' -66 NC_001347.2 + 140631 0.69 0.410713
Target:  5'- gGuCUGGGUGgcGGUCGUGGUGGUGGGg -3'
miRNA:   3'- aC-GGCCCGUacCCGGCGCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 140573 0.68 0.443196
Target:  5'- -uCCGGGCGgcggugcuGGCgGgGGUGGUGGAc -3'
miRNA:   3'- acGGCCCGUac------CCGgCgCCGCCACCU- -5'
1923 5' -66 NC_001347.2 + 136106 0.74 0.186287
Target:  5'- cGCCGGGCcucGGCCGgGGagGGUGGGg -3'
miRNA:   3'- aCGGCCCGuacCCGGCgCCg-CCACCU- -5'
1923 5' -66 NC_001347.2 + 135965 0.67 0.517552
Target:  5'- gGCCGGGCcgucggauggggGGGUCgaGCGGgGGgaggGGAg -3'
miRNA:   3'- aCGGCCCGua----------CCCGG--CGCCgCCa---CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.