Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1923 | 5' | -66 | NC_001347.2 | + | 2351 | 0.71 | 0.296637 |
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Target: 5'- cGCgCGGGCGugcUGGGCgCGCuGGCGcUGGGa -3' miRNA: 3'- aCG-GCCCGU---ACCCG-GCG-CCGCcACCU- -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 1945 | 0.72 | 0.265841 |
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Target: 5'- gGCUGGGCugcgcggcgGGGCCggcgacggggacgGCGGCGG-GGAc -3' miRNA: 3'- aCGGCCCGua-------CCCGG-------------CGCCGCCaCCU- -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 1731 | 0.67 | 0.521139 |
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Target: 5'- cGCCGGcgGUGGGCCGgcaCGaCGGUGGc -3' miRNA: 3'- aCGGCCcgUACCCGGC---GCcGCCACCu -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 1630 | 0.67 | 0.477077 |
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Target: 5'- gGCUGGGCGUGGGCacccCGCGcGCGa---- -3' miRNA: 3'- aCGGCCCGUACCCG----GCGC-CGCcaccu -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 165 | 0.68 | 0.418696 |
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Target: 5'- gUGCCGGGUGUgucgcGGGCgUGUGGCGGgugugccggcgGGGu -3' miRNA: 3'- -ACGGCCCGUA-----CCCG-GCGCCGCCa----------CCU- -5' |
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| 1923 | 5' | -66 | NC_001347.2 | + | 36 | 0.66 | 0.566697 |
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Target: 5'- gUGUuuUGGGUGUgucGGGgCGCGGCcgGGUGGGu -3' miRNA: 3'- -ACG--GCCCGUA---CCCgGCGCCG--CCACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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