miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19230 3' -59.7 NC_004684.1 + 43755 0.66 0.584324
Target:  5'- -gGCUGACgGuacCGGCGUGGuca-GGCCg -3'
miRNA:   3'- cgUGGCUGgU---GCCGCACCugagCCGG- -5'
19230 3' -59.7 NC_004684.1 + 330 0.66 0.583293
Target:  5'- cGCACCGGgUACGGCGcgaagcgUGcGcagcaGCUCGGUg -3'
miRNA:   3'- -CGUGGCUgGUGCCGC-------AC-C-----UGAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 9691 0.66 0.583293
Target:  5'- -aGCUGACCaaaaccaucgACGGCGaGGugUCcugauguGGCCg -3'
miRNA:   3'- cgUGGCUGG----------UGCCGCaCCugAG-------CCGG- -5'
19230 3' -59.7 NC_004684.1 + 46923 0.66 0.583293
Target:  5'- aGgACCGGCCaacgGCGGUGUGGGugacccgUUCGGg- -3'
miRNA:   3'- -CgUGGCUGG----UGCCGCACCU-------GAGCCgg -5'
19230 3' -59.7 NC_004684.1 + 59108 0.66 0.575065
Target:  5'- gGCACCGGguugccguugcuguCCA-GGCG-GGACUugucggugaacaggaUGGCCa -3'
miRNA:   3'- -CGUGGCU--------------GGUgCCGCaCCUGA---------------GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 2392 0.66 0.574038
Target:  5'- uCGCCGGgUGCGGCGUGcACgucgUGGCa -3'
miRNA:   3'- cGUGGCUgGUGCCGCACcUGa---GCCGg -5'
19230 3' -59.7 NC_004684.1 + 35439 0.66 0.574038
Target:  5'- -gAUCGGCU--GGCGUcGGAUUgCGGCCa -3'
miRNA:   3'- cgUGGCUGGugCCGCA-CCUGA-GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 18073 0.66 0.574038
Target:  5'- gGUGCCGACCACGGacucGAucuuCUCGGUg -3'
miRNA:   3'- -CGUGGCUGGUGCCgcacCU----GAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 44381 0.66 0.574038
Target:  5'- cGCuGCCGACgGCGGCcaGUcGGCccaGGCCg -3'
miRNA:   3'- -CG-UGGCUGgUGCCG--CAcCUGag-CCGG- -5'
19230 3' -59.7 NC_004684.1 + 42175 0.66 0.574038
Target:  5'- aGCGCCGcACUgcGCGGUgagcagugggccGUGGAgCUggUGGCCg -3'
miRNA:   3'- -CGUGGC-UGG--UGCCG------------CACCU-GA--GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 58206 0.66 0.573012
Target:  5'- uGCGCCcaACCuucCGGCGUGGugaagucguagACggugucgUCGGCCa -3'
miRNA:   3'- -CGUGGc-UGGu--GCCGCACC-----------UG-------AGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 11837 0.66 0.563796
Target:  5'- nCACCgGGCCACGGCGgccag-CGGCg -3'
miRNA:   3'- cGUGG-CUGGUGCCGCaccugaGCCGg -5'
19230 3' -59.7 NC_004684.1 + 64944 0.66 0.563796
Target:  5'- -aGCUGGCCGCccaGGCGgGcGAUgUCGGCCu -3'
miRNA:   3'- cgUGGCUGGUG---CCGCaC-CUG-AGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 37640 0.66 0.563796
Target:  5'- uGCGCUGGCCAUGGCc---GCcCGGUCa -3'
miRNA:   3'- -CGUGGCUGGUGCCGcaccUGaGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 45699 0.66 0.563796
Target:  5'- -aGCCauGACCACGGUGUcgcacaucgGGAagUCGGCa -3'
miRNA:   3'- cgUGG--CUGGUGCCGCA---------CCUg-AGCCGg -5'
19230 3' -59.7 NC_004684.1 + 46336 0.66 0.563796
Target:  5'- -gGCUGGCgaaCACGaugggaGCGUGGuggucgucguGCUCGGCCa -3'
miRNA:   3'- cgUGGCUG---GUGC------CGCACC----------UGAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 18467 0.66 0.563796
Target:  5'- gGCACCGAgCugGuGCuGUcGGugUcCGGCa -3'
miRNA:   3'- -CGUGGCUgGugC-CG-CA-CCugA-GCCGg -5'
19230 3' -59.7 NC_004684.1 + 13641 0.66 0.563796
Target:  5'- uCGCCG-CCGCGcaccuGCGUGGugUCucguGGCg -3'
miRNA:   3'- cGUGGCuGGUGC-----CGCACCugAG----CCGg -5'
19230 3' -59.7 NC_004684.1 + 44238 0.66 0.563796
Target:  5'- gGCACCugcuccagcguGACCAUGGCGcagucGACggCGGCa -3'
miRNA:   3'- -CGUGG-----------CUGGUGCCGCac---CUGa-GCCGg -5'
19230 3' -59.7 NC_004684.1 + 34869 0.66 0.563796
Target:  5'- cGCGuuGugCGCGaCGUgaaGGcCUUGGCCa -3'
miRNA:   3'- -CGUggCugGUGCcGCA---CCuGAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.