miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19230 5' -59.1 NC_004684.1 + 53909 0.65 0.557602
Target:  5'- uGUGACGGgggucaggcgagGUgCGGGGuCACCGugucggccaGGCACa -3'
miRNA:   3'- -UAUUGCCa-----------CAgGUCCC-GUGGC---------CCGUG- -5'
19230 5' -59.1 NC_004684.1 + 25574 0.66 0.5534
Target:  5'- ----aGGUGcgcuacccggagcgcUCCAgauuggguGGGaCGCCGGGCACa -3'
miRNA:   3'- uauugCCAC---------------AGGU--------CCC-GUGGCCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 13668 0.66 0.549207
Target:  5'- cGUGGCGcacgGUCCAGGacaugguggccGguUCGGGCACg -3'
miRNA:   3'- -UAUUGCca--CAGGUCC-----------CguGGCCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 64403 0.66 0.549207
Target:  5'- gGUGACgaaGGUgcgccgcccgccGUCCAGGGCACCGauggucucgauGuGCGCg -3'
miRNA:   3'- -UAUUG---CCA------------CAGGUCCCGUGGC-----------C-CGUG- -5'
19230 5' -59.1 NC_004684.1 + 9456 0.66 0.538769
Target:  5'- ---cUGGUGUUCcGGGCGCUGGaGCugGCg -3'
miRNA:   3'- uauuGCCACAGGuCCCGUGGCC-CG--UG- -5'
19230 5' -59.1 NC_004684.1 + 53398 0.66 0.538769
Target:  5'- --cACcGUGUCCAGGugGCCGGGCu- -3'
miRNA:   3'- uauUGcCACAGGUCCcgUGGCCCGug -5'
19230 5' -59.1 NC_004684.1 + 53064 0.66 0.538769
Target:  5'- ---gUGGUGUCCGacucgcuGGUACCGGcGUACa -3'
miRNA:   3'- uauuGCCACAGGUc------CCGUGGCC-CGUG- -5'
19230 5' -59.1 NC_004684.1 + 52613 0.66 0.528398
Target:  5'- uUGAUGGUcagGUC---GGUGCCGGGCACg -3'
miRNA:   3'- uAUUGCCA---CAGgucCCGUGGCCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 62846 0.66 0.528398
Target:  5'- gGUGAUGGUGUagcGGGCcuCCGGGguCu -3'
miRNA:   3'- -UAUUGCCACAgguCCCGu-GGCCCguG- -5'
19230 5' -59.1 NC_004684.1 + 24525 0.66 0.528398
Target:  5'- -cGGCGGUG-CCAucuacggcGGuGUGCCGGGcCGCg -3'
miRNA:   3'- uaUUGCCACaGGU--------CC-CGUGGCCC-GUG- -5'
19230 5' -59.1 NC_004684.1 + 33707 0.66 0.528398
Target:  5'- -cGAgGGUGUCCAGcgcGGUGgUGGuGCACa -3'
miRNA:   3'- uaUUgCCACAGGUC---CCGUgGCC-CGUG- -5'
19230 5' -59.1 NC_004684.1 + 16376 0.66 0.518104
Target:  5'- ---cCGGUGgaccagCAGGGCagcuACCGGGCGg -3'
miRNA:   3'- uauuGCCACag----GUCCCG----UGGCCCGUg -5'
19230 5' -59.1 NC_004684.1 + 66353 0.66 0.518104
Target:  5'- -gGGCGGgcggCCAGGGCgACgCGGGUg- -3'
miRNA:   3'- uaUUGCCaca-GGUCCCG-UG-GCCCGug -5'
19230 5' -59.1 NC_004684.1 + 48228 0.66 0.518104
Target:  5'- uUggUGGUGUCCAGcucgauGGCcuuGCCGGGgAg -3'
miRNA:   3'- uAuuGCCACAGGUC------CCG---UGGCCCgUg -5'
19230 5' -59.1 NC_004684.1 + 30315 0.66 0.518104
Target:  5'- -cGACGaGg--UCGGGGCACCGGcCACg -3'
miRNA:   3'- uaUUGC-CacaGGUCCCGUGGCCcGUG- -5'
19230 5' -59.1 NC_004684.1 + 30140 0.66 0.511965
Target:  5'- -gGGCGGUGUCUGGGugauauccggugcgaGCACCGguuuGGCGa -3'
miRNA:   3'- uaUUGCCACAGGUCC---------------CGUGGC----CCGUg -5'
19230 5' -59.1 NC_004684.1 + 63113 0.67 0.497761
Target:  5'- -cGGCGGcauUGUCUccGGGUagaggccauuccGCCGGGCACc -3'
miRNA:   3'- uaUUGCC---ACAGGu-CCCG------------UGGCCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 61698 0.67 0.487725
Target:  5'- ---uCGGUGcCguGGGCagGCCGGGCc- -3'
miRNA:   3'- uauuGCCACaGguCCCG--UGGCCCGug -5'
19230 5' -59.1 NC_004684.1 + 18855 0.67 0.487725
Target:  5'- cGUGGuCGGUGaCCGGGuggccGCACUcaGGGCACc -3'
miRNA:   3'- -UAUU-GCCACaGGUCC-----CGUGG--CCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 47046 0.67 0.487725
Target:  5'- --cGCGGUGa-CGGuGCACCGGGCGa -3'
miRNA:   3'- uauUGCCACagGUCcCGUGGCCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.