miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19230 5' -59.1 NC_004684.1 + 61698 0.67 0.487725
Target:  5'- ---uCGGUGcCguGGGCagGCCGGGCc- -3'
miRNA:   3'- uauuGCCACaGguCCCG--UGGCCCGug -5'
19230 5' -59.1 NC_004684.1 + 27339 0.67 0.477785
Target:  5'- -cGGCGGUaucgCCGuGGGCACC-GGCAUg -3'
miRNA:   3'- uaUUGCCAca--GGU-CCCGUGGcCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 32908 0.67 0.477785
Target:  5'- -cGGgGGUGUCCucGGCggugccggACCGGGUGCc -3'
miRNA:   3'- uaUUgCCACAGGucCCG--------UGGCCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 29777 0.67 0.477785
Target:  5'- -cGACGGcGUUCGgcauGGGCgGCCGGGCccGCa -3'
miRNA:   3'- uaUUGCCaCAGGU----CCCG-UGGCCCG--UG- -5'
19230 5' -59.1 NC_004684.1 + 49274 0.67 0.477785
Target:  5'- uUGGCGGUGUCCA---CACCGGccucGCGCu -3'
miRNA:   3'- uAUUGCCACAGGUcccGUGGCC----CGUG- -5'
19230 5' -59.1 NC_004684.1 + 40887 0.67 0.45918
Target:  5'- -cAGCGGUGgucagcacgugcucgCCAGgcauGGCAUggCGGGCACg -3'
miRNA:   3'- uaUUGCCACa--------------GGUC----CCGUG--GCCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 55792 0.67 0.458211
Target:  5'- ---uCGGUgccgucGUCCAGGcGCACCGGcGgGCu -3'
miRNA:   3'- uauuGCCA------CAGGUCC-CGUGGCC-CgUG- -5'
19230 5' -59.1 NC_004684.1 + 63720 0.67 0.458211
Target:  5'- -aGGCGGUG-CCGGGcCACCGuacgaugacccGGCACc -3'
miRNA:   3'- uaUUGCCACaGGUCCcGUGGC-----------CCGUG- -5'
19230 5' -59.1 NC_004684.1 + 6566 0.67 0.458211
Target:  5'- -cGACGGUgaGUCCGuguccGGCACCuGGUACg -3'
miRNA:   3'- uaUUGCCA--CAGGUc----CCGUGGcCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 24978 0.67 0.455312
Target:  5'- ---cCGGUGUcCCAGGGCGgcauccugcccaacCCGGucGCGCu -3'
miRNA:   3'- uauuGCCACA-GGUCCCGU--------------GGCC--CGUG- -5'
19230 5' -59.1 NC_004684.1 + 16707 0.68 0.439075
Target:  5'- --cGCGGUacCCGauugcacGGCACCGGGCGCa -3'
miRNA:   3'- uauUGCCAcaGGUc------CCGUGGCCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 19555 0.68 0.429679
Target:  5'- -gGGCGGUG-CCAGGuCuCCGGGCcugGCg -3'
miRNA:   3'- uaUUGCCACaGGUCCcGuGGCCCG---UG- -5'
19230 5' -59.1 NC_004684.1 + 67279 0.68 0.429679
Target:  5'- --cACGG-GUgCAGGuguuGCGCCGGGCGa -3'
miRNA:   3'- uauUGCCaCAgGUCC----CGUGGCCCGUg -5'
19230 5' -59.1 NC_004684.1 + 4291 0.68 0.417643
Target:  5'- ---cUGGUGcugCCAcacgagugggacgcGGuGCACCGGGCGCa -3'
miRNA:   3'- uauuGCCACa--GGU--------------CC-CGUGGCCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 25874 0.68 0.411248
Target:  5'- --uGCGGUG-CCAGGGCcucguAgCGGGC-Ca -3'
miRNA:   3'- uauUGCCACaGGUCCCG-----UgGCCCGuG- -5'
19230 5' -59.1 NC_004684.1 + 8022 0.68 0.402219
Target:  5'- -gGGCGGU-UCCAGGaCACCGuGCGCg -3'
miRNA:   3'- uaUUGCCAcAGGUCCcGUGGCcCGUG- -5'
19230 5' -59.1 NC_004684.1 + 4123 0.68 0.402219
Target:  5'- -cGGCGGcuccagGUCCAGGaGCGCaucGGCGCg -3'
miRNA:   3'- uaUUGCCa-----CAGGUCC-CGUGgc-CCGUG- -5'
19230 5' -59.1 NC_004684.1 + 43336 0.68 0.393316
Target:  5'- gGUGACcGUGccgUCGGGGUugaucaccgcGCCGGGCACc -3'
miRNA:   3'- -UAUUGcCACa--GGUCCCG----------UGGCCCGUG- -5'
19230 5' -59.1 NC_004684.1 + 46459 0.69 0.384542
Target:  5'- --cGCGGUGggCCAGGGCcACCacGCGCu -3'
miRNA:   3'- uauUGCCACa-GGUCCCG-UGGccCGUG- -5'
19230 5' -59.1 NC_004684.1 + 9045 0.69 0.384542
Target:  5'- --cGCGGcaacgCCAgcaGGGcCACCGGGCGCg -3'
miRNA:   3'- uauUGCCaca--GGU---CCC-GUGGCCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.