miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19231 3' -58.5 NC_004684.1 + 57552 0.66 0.590475
Target:  5'- cGcGACCGc-CGAGCUGCGCCggUUGGc -3'
miRNA:   3'- uCcUUGGCcaGCUCGACGCGG--AACCa -5'
19231 3' -58.5 NC_004684.1 + 11098 0.66 0.579872
Target:  5'- cGGcgcGCCagGGcCGGGCUGaUGCCUUGGa -3'
miRNA:   3'- uCCu--UGG--CCaGCUCGAC-GCGGAACCa -5'
19231 3' -58.5 NC_004684.1 + 65757 0.66 0.579872
Target:  5'- uGGGcGCCGGUacccGGUUGCGCCggugcaGGUg -3'
miRNA:   3'- -UCCuUGGCCAgc--UCGACGCGGaa----CCA- -5'
19231 3' -58.5 NC_004684.1 + 38333 0.66 0.558796
Target:  5'- cAGGAACUGGUUcAGCUGCacaCCccGGUg -3'
miRNA:   3'- -UCCUUGGCCAGcUCGACGc--GGaaCCA- -5'
19231 3' -58.5 NC_004684.1 + 53796 0.66 0.558796
Target:  5'- cGGcGCUGGgaUCGGGUUGCGCCUccaugcGGg -3'
miRNA:   3'- uCCuUGGCC--AGCUCGACGCGGAa-----CCa -5'
19231 3' -58.5 NC_004684.1 + 12639 0.67 0.534835
Target:  5'- gAGGAACUGacccccgacgauguGcgCGAGCUGCGCUcgcUGGUg -3'
miRNA:   3'- -UCCUUGGC--------------Ca-GCUCGACGCGGa--ACCA- -5'
19231 3' -58.5 NC_004684.1 + 23130 0.67 0.527613
Target:  5'- uGGuguGCCGccGUCGA-CUGCGCCaUGGUc -3'
miRNA:   3'- uCCu--UGGC--CAGCUcGACGCGGaACCA- -5'
19231 3' -58.5 NC_004684.1 + 55418 0.67 0.51736
Target:  5'- cGGugccGCCGGUCGcGGUgUGCGCCgcaGGUg -3'
miRNA:   3'- uCCu---UGGCCAGC-UCG-ACGCGGaa-CCA- -5'
19231 3' -58.5 NC_004684.1 + 62390 0.68 0.487105
Target:  5'- cAGGAgcggcACCGGgcccuugcccUCGcGCUGCGCCcaGGUg -3'
miRNA:   3'- -UCCU-----UGGCC----------AGCuCGACGCGGaaCCA- -5'
19231 3' -58.5 NC_004684.1 + 1743 0.68 0.478191
Target:  5'- cGGGACCGGguaggucgggaccgGAGCUGCGCgCgUGGc -3'
miRNA:   3'- uCCUUGGCCag------------CUCGACGCG-GaACCa -5'
19231 3' -58.5 NC_004684.1 + 7878 0.68 0.448127
Target:  5'- cGGAACCGGU-GAGCacacgucagcGUGCCcUGGUg -3'
miRNA:   3'- uCCUUGGCCAgCUCGa---------CGCGGaACCA- -5'
19231 3' -58.5 NC_004684.1 + 55360 0.69 0.429296
Target:  5'- ---uGCUGGUCGAGCaUG-GCCUUGGc -3'
miRNA:   3'- uccuUGGCCAGCUCG-ACgCGGAACCa -5'
19231 3' -58.5 NC_004684.1 + 44663 0.69 0.401945
Target:  5'- -cGAACCGGUCGcGCgUGCcagccacgGCCUUGGc -3'
miRNA:   3'- ucCUUGGCCAGCuCG-ACG--------CGGAACCa -5'
19231 3' -58.5 NC_004684.1 + 29106 0.69 0.393077
Target:  5'- uGGAGCCG--UGAGCUGCGCCa---- -3'
miRNA:   3'- uCCUUGGCcaGCUCGACGCGGaacca -5'
19231 3' -58.5 NC_004684.1 + 58163 0.7 0.375728
Target:  5'- gGGGAGCCGGUgCGA-CUGUGCCg---- -3'
miRNA:   3'- -UCCUUGGCCA-GCUcGACGCGGaacca -5'
19231 3' -58.5 NC_004684.1 + 29377 0.7 0.358902
Target:  5'- cAGGAACUGGUCGcGCuUGUG-CUUGGc -3'
miRNA:   3'- -UCCUUGGCCAGCuCG-ACGCgGAACCa -5'
19231 3' -58.5 NC_004684.1 + 47739 0.7 0.342611
Target:  5'- uGGGugUGGUUGuGUUGCGCgUUGGc -3'
miRNA:   3'- uCCUugGCCAGCuCGACGCGgAACCa -5'
19231 3' -58.5 NC_004684.1 + 17153 0.71 0.32686
Target:  5'- uGGGcACCGucgucgccGUCGAGCUGguacaGCCUUGGg -3'
miRNA:   3'- -UCCuUGGC--------CAGCUCGACg----CGGAACCa -5'
19231 3' -58.5 NC_004684.1 + 47113 0.71 0.32686
Target:  5'- cGGGGGuCCGG-CaGAGCgUGCGCCUcGGUg -3'
miRNA:   3'- -UCCUU-GGCCaG-CUCG-ACGCGGAaCCA- -5'
19231 3' -58.5 NC_004684.1 + 53273 0.73 0.231675
Target:  5'- cGGGuguACCGGUUcaccugGAGCUGCuCCUUGGg -3'
miRNA:   3'- -UCCu--UGGCCAG------CUCGACGcGGAACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.