miRNA display CGI


Results 21 - 40 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19231 5' -63.3 NC_004684.1 + 4866 0.66 0.410453
Target:  5'- -gGCCAgCGACCAGGCuGaCUGGgacaccaaguCCCgCCg -3'
miRNA:   3'- ggUGGU-GCUGGUCCGcC-GACC----------GGG-GG- -5'
19231 5' -63.3 NC_004684.1 + 65835 0.66 0.410453
Target:  5'- gCACCAUcAgCAGGCGGUugugggGGCCgCUg -3'
miRNA:   3'- gGUGGUGcUgGUCCGCCGa-----CCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 40987 0.66 0.410453
Target:  5'- gCCAgCGCG-CCGguGGCGGCguUGGCCagaUCg -3'
miRNA:   3'- -GGUgGUGCuGGU--CCGCCG--ACCGGg--GG- -5'
19231 5' -63.3 NC_004684.1 + 11761 0.66 0.410453
Target:  5'- gCAUCugGuucuCCGGuGUGG-UGGCCCCg -3'
miRNA:   3'- gGUGGugCu---GGUC-CGCCgACCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 14000 0.66 0.410453
Target:  5'- gCCACCugGACaCGGuGCaG-UGGCCCa- -3'
miRNA:   3'- -GGUGGugCUG-GUC-CGcCgACCGGGgg -5'
19231 5' -63.3 NC_004684.1 + 32561 0.66 0.410453
Target:  5'- -gACCugGAgauUCGGGCGGUcGGCUCgCu -3'
miRNA:   3'- ggUGGugCU---GGUCCGCCGaCCGGGgG- -5'
19231 5' -63.3 NC_004684.1 + 27785 0.66 0.410453
Target:  5'- cCCGCC-CGACgGugcgcGGCGGUUcGGUCCUg -3'
miRNA:   3'- -GGUGGuGCUGgU-----CCGCCGA-CCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 6817 0.66 0.410453
Target:  5'- aCGCCGuCGGCCuGGagGaGCUGGCCUa- -3'
miRNA:   3'- gGUGGU-GCUGGuCCg-C-CGACCGGGgg -5'
19231 5' -63.3 NC_004684.1 + 13907 0.66 0.409589
Target:  5'- aUCACCgACGGCCAGaucgacaGCuGGCUGGCggCUCg -3'
miRNA:   3'- -GGUGG-UGCUGGUC-------CG-CCGACCGg-GGG- -5'
19231 5' -63.3 NC_004684.1 + 27511 0.66 0.401866
Target:  5'- aCACCgACGGCCuGGGCGaGCUGauGCgCgCCa -3'
miRNA:   3'- gGUGG-UGCUGG-UCCGC-CGAC--CGgG-GG- -5'
19231 5' -63.3 NC_004684.1 + 40547 0.66 0.401866
Target:  5'- aCCuCCGCGACCuccAGGagcugGGCgaaGCCCUCg -3'
miRNA:   3'- -GGuGGUGCUGG---UCCg----CCGac-CGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 746 0.66 0.401866
Target:  5'- aCACCgACGcCCuGGCGGC--GCUCCUg -3'
miRNA:   3'- gGUGG-UGCuGGuCCGCCGacCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 53196 0.66 0.401866
Target:  5'- gCGCCGCuGGCCAGGaauGCguccagGGUgCCCa -3'
miRNA:   3'- gGUGGUG-CUGGUCCgc-CGa-----CCGgGGG- -5'
19231 5' -63.3 NC_004684.1 + 20261 0.66 0.401866
Target:  5'- gCCGCCuACGccACCgAGGCGcacgcucuGCcGGaCCCCCg -3'
miRNA:   3'- -GGUGG-UGC--UGG-UCCGC--------CGaCC-GGGGG- -5'
19231 5' -63.3 NC_004684.1 + 59998 0.66 0.401866
Target:  5'- gCGCCgcaguauuggACGGCgCAGGCGGggGGUCUCg -3'
miRNA:   3'- gGUGG----------UGCUG-GUCCGCCgaCCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 20313 0.66 0.401866
Target:  5'- aCACCAUGGC--GGCGGC-GGCCaUCg -3'
miRNA:   3'- gGUGGUGCUGguCCGCCGaCCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 57281 0.66 0.401866
Target:  5'- uCCAgguCCACGcgcuugucGCCGGuGUGGCUGaGCaCCCg -3'
miRNA:   3'- -GGU---GGUGC--------UGGUC-CGCCGAC-CGgGGG- -5'
19231 5' -63.3 NC_004684.1 + 37812 0.66 0.401866
Target:  5'- uUCGCCgaguGCGGCCaccgccuuguaAGGCaGC-GGCCCCa -3'
miRNA:   3'- -GGUGG----UGCUGG-----------UCCGcCGaCCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 2251 0.66 0.401866
Target:  5'- aCGCCACgcuGAUCAGcGCGGCggcgGGCauugCCgCCa -3'
miRNA:   3'- gGUGGUG---CUGGUC-CGCCGa---CCG----GG-GG- -5'
19231 5' -63.3 NC_004684.1 + 32933 0.66 0.401014
Target:  5'- -aGCCAUGACCcuugaggcacuccAGGCGcucgcGCUGGCCaaCCu -3'
miRNA:   3'- ggUGGUGCUGG-------------UCCGC-----CGACCGGg-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.