miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19232 3' -51.2 NC_004684.1 + 36998 0.66 0.949314
Target:  5'- gGCagCG-CCGGGaUGCgcgUGGGGuCCACCa -3'
miRNA:   3'- -UGa-GCaGGUCC-AUGa--ACUCUuGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 14562 0.66 0.949314
Target:  5'- cGCUgGacaCCuGGUGCgccGGGGCCACCg -3'
miRNA:   3'- -UGAgCa--GGuCCAUGaacUCUUGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 66668 0.66 0.949314
Target:  5'- -gUCGUCgGGGUAgUUG-GAGcgccaggccguCCACCg -3'
miRNA:   3'- ugAGCAGgUCCAUgAACuCUU-----------GGUGG- -5'
19232 3' -51.2 NC_004684.1 + 53214 0.66 0.939621
Target:  5'- --gCGUCCAgGGUGCcc-AGcACCACCa -3'
miRNA:   3'- ugaGCAGGU-CCAUGaacUCuUGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 54508 0.66 0.938071
Target:  5'- aGCUCGUaCCgcgcucaccggcggGGGUACgagcgccgUGAGGACCGgUg -3'
miRNA:   3'- -UGAGCA-GG--------------UCCAUGa-------ACUCUUGGUgG- -5'
19232 3' -51.2 NC_004684.1 + 26310 0.66 0.934356
Target:  5'- aGCUCGgCCAGGccGCc---GGGCCGCCg -3'
miRNA:   3'- -UGAGCaGGUCCa-UGaacuCUUGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 60811 0.66 0.928809
Target:  5'- uGCguggCGUaCCAGGUGCcgGAcacGGACuCACCg -3'
miRNA:   3'- -UGa---GCA-GGUCCAUGaaCU---CUUG-GUGG- -5'
19232 3' -51.2 NC_004684.1 + 34126 0.66 0.928809
Target:  5'- uGCUCGUCgC-GGUGCUguUGAGcgacAGCaCGCCc -3'
miRNA:   3'- -UGAGCAG-GuCCAUGA--ACUC----UUG-GUGG- -5'
19232 3' -51.2 NC_004684.1 + 28698 0.66 0.92298
Target:  5'- uGCUCGaCCAGaucaGC-UGGGAGCCGCg -3'
miRNA:   3'- -UGAGCaGGUCca--UGaACUCUUGGUGg -5'
19232 3' -51.2 NC_004684.1 + 1548 0.66 0.92298
Target:  5'- cGCUCG-CaugcGGUGCaccUGuGAGCCGCCg -3'
miRNA:   3'- -UGAGCaGgu--CCAUGa--ACuCUUGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 48649 0.66 0.92298
Target:  5'- uUUCGUC--GGUGCUUaGGAcGCCGCCa -3'
miRNA:   3'- uGAGCAGguCCAUGAAcUCU-UGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 59124 0.67 0.910476
Target:  5'- uGCU-GUCCAGGcgggACUUGucggugaacaGGAugGCCACCc -3'
miRNA:   3'- -UGAgCAGGUCCa---UGAAC----------UCU--UGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 44741 0.67 0.896856
Target:  5'- cCUUcUCCAGGUcUUUGGGGucGCCGCUg -3'
miRNA:   3'- uGAGcAGGUCCAuGAACUCU--UGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 44513 0.67 0.889636
Target:  5'- -gUCGUCCAGcGU-CUUG---GCCGCCg -3'
miRNA:   3'- ugAGCAGGUC-CAuGAACucuUGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 2036 0.68 0.882149
Target:  5'- -gUCGcCCuGGUgGCccUGGGGGCCGCCa -3'
miRNA:   3'- ugAGCaGGuCCA-UGa-ACUCUUGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 66595 0.68 0.882149
Target:  5'- --aCGgCgAGGUGCaggUGAGGGCCAUCa -3'
miRNA:   3'- ugaGCaGgUCCAUGa--ACUCUUGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 64027 0.68 0.882149
Target:  5'- cCUUGcgCCAGGcgUGCUgGAGcACCGCCu -3'
miRNA:   3'- uGAGCa-GGUCC--AUGAaCUCuUGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 3904 0.68 0.882149
Target:  5'- cCUC-UCCGGGUACc-GGGAagaccccgcugACCACCu -3'
miRNA:   3'- uGAGcAGGUCCAUGaaCUCU-----------UGGUGG- -5'
19232 3' -51.2 NC_004684.1 + 50942 0.68 0.866393
Target:  5'- cCUCGUCCAGGcGCacgaUGGuGugCGCCa -3'
miRNA:   3'- uGAGCAGGUCCaUGa---ACUcUugGUGG- -5'
19232 3' -51.2 NC_004684.1 + 32614 0.68 0.866393
Target:  5'- gGC-CGUaCCcGGUGCggagUGGGAcgacACCGCCg -3'
miRNA:   3'- -UGaGCA-GGuCCAUGa---ACUCU----UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.