miRNA display CGI


Results 21 - 40 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19232 5' -64 NC_004684.1 + 53075 0.66 0.357564
Target:  5'- cUCGCUGGuaCCGGCGUacaccuGCgCGGCGGc -3'
miRNA:   3'- -AGCGACC--GGUCGCGguc---CGgGCUGCC- -5'
19232 5' -64 NC_004684.1 + 8440 0.66 0.357564
Target:  5'- -gGCggacagGGcCCGGCGCaAGGCCUGGCu- -3'
miRNA:   3'- agCGa-----CC-GGUCGCGgUCCGGGCUGcc -5'
19232 5' -64 NC_004684.1 + 52678 0.66 0.357564
Target:  5'- aUUGCgUGGCCc-CGUaCAGGCCCuGCGGc -3'
miRNA:   3'- -AGCG-ACCGGucGCG-GUCCGGGcUGCC- -5'
19232 5' -64 NC_004684.1 + 46955 0.66 0.357564
Target:  5'- cCGCcGuGCaCAGCGCCAGG-CUGAUGc -3'
miRNA:   3'- aGCGaC-CG-GUCGCGGUCCgGGCUGCc -5'
19232 5' -64 NC_004684.1 + 60597 0.66 0.357564
Target:  5'- gUCGUagUGGCCGuCGuCCAGuGCaCCGGCGa -3'
miRNA:   3'- -AGCG--ACCGGUcGC-GGUC-CG-GGCUGCc -5'
19232 5' -64 NC_004684.1 + 51458 0.66 0.357564
Target:  5'- aUGUaGGCCc-CGCCAGGCuCCGGugcCGGg -3'
miRNA:   3'- aGCGaCCGGucGCGGUCCG-GGCU---GCC- -5'
19232 5' -64 NC_004684.1 + 54621 0.66 0.356775
Target:  5'- cUCGUUGGCCgcaGGCGCagccgcgCGGGCCaaGAgGGc -3'
miRNA:   3'- -AGCGACCGG---UCGCG-------GUCCGGg-CUgCC- -5'
19232 5' -64 NC_004684.1 + 42759 0.66 0.3552
Target:  5'- -gGcCUGGCCGGUGCgAuccccgguuugagcGGCCUGcCGGg -3'
miRNA:   3'- agC-GACCGGUCGCGgU--------------CCGGGCuGCC- -5'
19232 5' -64 NC_004684.1 + 37641 0.66 0.349727
Target:  5'- gCGCUGGCCAuggccGCccgGUCAGGCaUCGAccCGGu -3'
miRNA:   3'- aGCGACCGGU-----CG---CGGUCCG-GGCU--GCC- -5'
19232 5' -64 NC_004684.1 + 53199 0.66 0.349727
Target:  5'- cCGCUGGCCAggaauGCGuCCAGgguGCCCaGCa- -3'
miRNA:   3'- aGCGACCGGU-----CGC-GGUC---CGGGcUGcc -5'
19232 5' -64 NC_004684.1 + 51873 0.66 0.349727
Target:  5'- gCGCcu-CCAGCGCCcGGCcCCGGgGGc -3'
miRNA:   3'- aGCGaccGGUCGCGGuCCG-GGCUgCC- -5'
19232 5' -64 NC_004684.1 + 26420 0.66 0.349727
Target:  5'- gCGCUGG-CAGCgggguucgccGCCGguGGCCCGguguACGGc -3'
miRNA:   3'- aGCGACCgGUCG----------CGGU--CCGGGC----UGCC- -5'
19232 5' -64 NC_004684.1 + 62294 0.66 0.349727
Target:  5'- gCGCUGcuCCAGCGCCgcgcGGGCCuCcGCGa -3'
miRNA:   3'- aGCGACc-GGUCGCGG----UCCGG-GcUGCc -5'
19232 5' -64 NC_004684.1 + 30638 0.66 0.349727
Target:  5'- gCGC-GGCCcuggcGGCGUCAGcGCCgGgACGGc -3'
miRNA:   3'- aGCGaCCGG-----UCGCGGUC-CGGgC-UGCC- -5'
19232 5' -64 NC_004684.1 + 32964 0.66 0.349727
Target:  5'- gCGCUGGCCAaccuCGCC--GCCuCGACGc -3'
miRNA:   3'- aGCGACCGGUc---GCGGucCGG-GCUGCc -5'
19232 5' -64 NC_004684.1 + 53417 0.66 0.349727
Target:  5'- -gGCUGGCCuGCGCC--GCgCGACu- -3'
miRNA:   3'- agCGACCGGuCGCGGucCGgGCUGcc -5'
19232 5' -64 NC_004684.1 + 31152 0.66 0.349727
Target:  5'- -aGCucuUGGCCA-CGCCAgcGGUCuCGGCGGu -3'
miRNA:   3'- agCG---ACCGGUcGCGGU--CCGG-GCUGCC- -5'
19232 5' -64 NC_004684.1 + 63679 0.66 0.349727
Target:  5'- gCGUUgauaccGGCCAGCGCgGcGGCgCUGGCGa -3'
miRNA:   3'- aGCGA------CCGGUCGCGgU-CCG-GGCUGCc -5'
19232 5' -64 NC_004684.1 + 43276 0.66 0.349727
Target:  5'- cUGCUGcGUCGGCguGCCGGGCUgCGGCa- -3'
miRNA:   3'- aGCGAC-CGGUCG--CGGUCCGG-GCUGcc -5'
19232 5' -64 NC_004684.1 + 35592 0.66 0.3474
Target:  5'- gUCGCcaaaguugUGGaCCAGCGCCauguucccggucucGGGgUCGAUGGc -3'
miRNA:   3'- -AGCG--------ACC-GGUCGCGG--------------UCCgGGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.