miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19233 3' -54.7 NC_004684.1 + 7644 0.66 0.771103
Target:  5'- cGUGGCgGGCGUGGuGACCGgGUCGGCGg -3'
miRNA:   3'- -CACCGgCUGUGUC-UUGGU-CAGCUGUg -5'
19233 3' -54.7 NC_004684.1 + 35170 0.66 0.771103
Target:  5'- gGUGGCCGAgcCGGAACCGGgUGuGCAg -3'
miRNA:   3'- -CACCGGCUguGUCUUGGUCaGC-UGUg -5'
19233 3' -54.7 NC_004684.1 + 59134 0.66 0.771103
Target:  5'- -cGGCgcaCGugGCGGGACUgcauguuGUCGGCGCu -3'
miRNA:   3'- caCCG---GCugUGUCUUGGu------CAGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 1380 0.66 0.768084
Target:  5'- cUGGCCGACGCcaAGGccgccguugcacugGCCAG-CGACc- -3'
miRNA:   3'- cACCGGCUGUG--UCU--------------UGGUCaGCUGug -5'
19233 3' -54.7 NC_004684.1 + 36910 0.66 0.76099
Target:  5'- cUGGCCgGugGCAucGcCCGGUCGAgGCc -3'
miRNA:   3'- cACCGG-CugUGUcuU-GGUCAGCUgUG- -5'
19233 3' -54.7 NC_004684.1 + 49221 0.66 0.76099
Target:  5'- -cGGUCGGUGCcGGGCCGggcGUCGGCACg -3'
miRNA:   3'- caCCGGCUGUGuCUUGGU---CAGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 53702 0.66 0.759972
Target:  5'- uUGGCCGACcgguagggGCGGAuguccggcaugguGCCGGguUCGACGg -3'
miRNA:   3'- cACCGGCUG--------UGUCU-------------UGGUC--AGCUGUg -5'
19233 3' -54.7 NC_004684.1 + 4187 0.67 0.750747
Target:  5'- gGUGGCCGAgAagauGGGGCCGuUCGGcCGCg -3'
miRNA:   3'- -CACCGGCUgUg---UCUUGGUcAGCU-GUG- -5'
19233 3' -54.7 NC_004684.1 + 56162 0.67 0.750747
Target:  5'- cUGGCCGACgACGGcGACgaCGG-CGGCGCu -3'
miRNA:   3'- cACCGGCUG-UGUC-UUG--GUCaGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 18870 0.67 0.750747
Target:  5'- gGUGGCCGcACuCAGGgcACCAGcgCGGCu- -3'
miRNA:   3'- -CACCGGC-UGuGUCU--UGGUCa-GCUGug -5'
19233 3' -54.7 NC_004684.1 + 36366 0.67 0.750747
Target:  5'- -aGGUCGuCcCAGAacucACCGGUCGGCGu -3'
miRNA:   3'- caCCGGCuGuGUCU----UGGUCAGCUGUg -5'
19233 3' -54.7 NC_004684.1 + 14305 0.67 0.744543
Target:  5'- -aGGCCGccGCGCAGGuguacgccgguaccaGCgAGUCgGACACc -3'
miRNA:   3'- caCCGGC--UGUGUCU---------------UGgUCAG-CUGUG- -5'
19233 3' -54.7 NC_004684.1 + 61068 0.67 0.744543
Target:  5'- -gGGCCGGuggcggcauugucucCGCAacgccgccACCGGUCGACGCg -3'
miRNA:   3'- caCCGGCU---------------GUGUcu------UGGUCAGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 20057 0.67 0.740384
Target:  5'- gGUGGCCaugcucGACGCccacACCGG-CGACACg -3'
miRNA:   3'- -CACCGG------CUGUGucu-UGGUCaGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 13462 0.67 0.740384
Target:  5'- cUGGCCGACACGGuGACCc--CG-CACc -3'
miRNA:   3'- cACCGGCUGUGUC-UUGGucaGCuGUG- -5'
19233 3' -54.7 NC_004684.1 + 16039 0.67 0.740384
Target:  5'- gGUGGaCUgGGCGCAGAucgaGCCGGUCacgauGGCGCu -3'
miRNA:   3'- -CACC-GG-CUGUGUCU----UGGUCAG-----CUGUG- -5'
19233 3' -54.7 NC_004684.1 + 57166 0.67 0.737253
Target:  5'- gGUGGCCGACgcgcacgcucgggcGCAGGcggGCCuGgaaggcggCGGCGCg -3'
miRNA:   3'- -CACCGGCUG--------------UGUCU---UGGuCa-------GCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 44537 0.67 0.719345
Target:  5'- gGUGGCCcGgAC-GAAcCCGGUCGGCAg -3'
miRNA:   3'- -CACCGGcUgUGuCUU-GGUCAGCUGUg -5'
19233 3' -54.7 NC_004684.1 + 775 0.67 0.719345
Target:  5'- -aGGCCGcagGCACcaagcuggccaAGAACCAgGUCGuGCGCg -3'
miRNA:   3'- caCCGGC---UGUG-----------UCUUGGU-CAGC-UGUG- -5'
19233 3' -54.7 NC_004684.1 + 18378 0.67 0.718284
Target:  5'- gGUGGCCGAUcuguucaGCGGggUCGGgccCGGCcaGCa -3'
miRNA:   3'- -CACCGGCUG-------UGUCuuGGUCa--GCUG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.