miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19233 5' -64.2 NC_004684.1 + 65691 0.66 0.324015
Target:  5'- cGGUGCcugccaGGugCAGGUucGgGCCCGGg -3'
miRNA:   3'- cCCACG------CCugGUCCGcaCgCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 66715 0.67 0.302552
Target:  5'- cGGG-GCcgaGGAUCAGGCGcacgcugucgUGCGCgUCGGUg -3'
miRNA:   3'- -CCCaCG---CCUGGUCCGC----------ACGCG-GGCCA- -5'
19233 5' -64.2 NC_004684.1 + 48029 0.67 0.302552
Target:  5'- cGGGaaccgcUGCGcGAUCAGGCG-GCGCaugCGGa -3'
miRNA:   3'- -CCC------ACGC-CUGGUCCGCaCGCGg--GCCa -5'
19233 5' -64.2 NC_004684.1 + 37637 0.67 0.302552
Target:  5'- cGGUGCGcuGGCCAuGGC---CGCCCGGUc -3'
miRNA:   3'- cCCACGC--CUGGU-CCGcacGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 40937 0.67 0.295645
Target:  5'- ---cGCGG-CCAGGCGUGCcGCcguacaCCGGg -3'
miRNA:   3'- cccaCGCCuGGUCCGCACG-CG------GGCCa -5'
19233 5' -64.2 NC_004684.1 + 7552 0.67 0.293598
Target:  5'- cGGUGCuGGACC-GGCcccggguggcgcugGUGCGgCUGGUg -3'
miRNA:   3'- cCCACG-CCUGGuCCG--------------CACGCgGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 58761 0.67 0.288862
Target:  5'- gGGGUGCcgaGGAUC-GGCGgugccgGUGCaCCGGg -3'
miRNA:   3'- -CCCACG---CCUGGuCCGCa-----CGCG-GGCCa -5'
19233 5' -64.2 NC_004684.1 + 60735 0.67 0.288862
Target:  5'- aGGUGCccggcGACCGGGUG-GcCGCCgGGUg -3'
miRNA:   3'- cCCACGc----CUGGUCCGCaC-GCGGgCCA- -5'
19233 5' -64.2 NC_004684.1 + 35231 0.67 0.282202
Target:  5'- uGGGUGCcGuACCuGGUGc-CGCCCGGUu -3'
miRNA:   3'- -CCCACGcC-UGGuCCGCacGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 61445 0.67 0.282202
Target:  5'- cGGcGCGG-CCAGGuUGgacCGCCCGGUg -3'
miRNA:   3'- cCCaCGCCuGGUCC-GCac-GCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 39307 0.68 0.275663
Target:  5'- cGGUGCGGGUCGcGCG-GCGgCCCGGc -3'
miRNA:   3'- cCCACGCCUGGUcCGCaCGC-GGGCCa -5'
19233 5' -64.2 NC_004684.1 + 50324 0.68 0.269247
Target:  5'- cGGUGCGcccGGCCAGGCGgGCGgCCu-- -3'
miRNA:   3'- cCCACGC---CUGGUCCGCaCGCgGGcca -5'
19233 5' -64.2 NC_004684.1 + 57185 0.68 0.262951
Target:  5'- cGGGcgcagGCGGGCCuggaAGGCGgcgGCGCgaUGGUg -3'
miRNA:   3'- -CCCa----CGCCUGG----UCCGCa--CGCGg-GCCA- -5'
19233 5' -64.2 NC_004684.1 + 45779 0.68 0.256775
Target:  5'- cGGUGCGGuACCGGuCGUagaccuguucGCGCUCGGc -3'
miRNA:   3'- cCCACGCC-UGGUCcGCA----------CGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 63915 0.68 0.250719
Target:  5'- cGGUGCGG-CCcGGCGUGgcugaGCuuGGg -3'
miRNA:   3'- cCCACGCCuGGuCCGCACg----CGggCCa -5'
19233 5' -64.2 NC_004684.1 + 62317 0.68 0.250719
Target:  5'- gGGGUGCcaccgggucuGGAUCAGGauCGUgggaGCGCCgGGUg -3'
miRNA:   3'- -CCCACG----------CCUGGUCC--GCA----CGCGGgCCA- -5'
19233 5' -64.2 NC_004684.1 + 20322 0.68 0.250719
Target:  5'- cGGcgGCGG-CCAucgagaucGGCGU-CGCCCGGUg -3'
miRNA:   3'- cCCa-CGCCuGGU--------CCGCAcGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 32923 0.68 0.24537
Target:  5'- cGGUGcCGGACCGGGUGccucgggcaggauggGcCGCUCGGg -3'
miRNA:   3'- cCCAC-GCCUGGUCCGCa--------------C-GCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 51002 0.69 0.227666
Target:  5'- uGGGUGCGGAUgUAGuCGaUGUGCCgGGUg -3'
miRNA:   3'- -CCCACGCCUG-GUCcGC-ACGCGGgCCA- -5'
19233 5' -64.2 NC_004684.1 + 8672 0.69 0.227666
Target:  5'- cGGUGCGG-CCAGGUgccuguggccGUGCGUgaGGUc -3'
miRNA:   3'- cCCACGCCuGGUCCG----------CACGCGggCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.