miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 3' -53.9 NC_004684.1 + 29115 0.67 0.784281
Target:  5'- -gAGC-UGCgccagaccaGCACGUGCGAGCugGu -3'
miRNA:   3'- ggUCGaACGac-------CGUGCACGCUUGugU- -5'
19234 3' -53.9 NC_004684.1 + 8992 0.67 0.784281
Target:  5'- aCCAGg-UGCUGcGCACGgugcugaugcGCGAAgGCAu -3'
miRNA:   3'- -GGUCgaACGAC-CGUGCa---------CGCUUgUGU- -5'
19234 3' -53.9 NC_004684.1 + 27516 0.67 0.774286
Target:  5'- gCCAGag-GCUGGCaaggACGUGCGcAGC-CGc -3'
miRNA:   3'- -GGUCgaaCGACCG----UGCACGC-UUGuGU- -5'
19234 3' -53.9 NC_004684.1 + 7561 0.67 0.774286
Target:  5'- aCCGGCcccgGgUGGCGCugGUGCGGcugguGCGCGg -3'
miRNA:   3'- -GGUCGaa--CgACCGUG--CACGCU-----UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 41473 0.67 0.764144
Target:  5'- cCCGGCggUGCUGGCcaAgGUGaUGGACAa- -3'
miRNA:   3'- -GGUCGa-ACGACCG--UgCAC-GCUUGUgu -5'
19234 3' -53.9 NC_004684.1 + 46585 0.67 0.764144
Target:  5'- cCCAGUcgucgcgGCUGGCguuGCGUGcCGGugGCu -3'
miRNA:   3'- -GGUCGaa-----CGACCG---UGCAC-GCUugUGu -5'
19234 3' -53.9 NC_004684.1 + 58343 0.67 0.764144
Target:  5'- -gAGCUgGCUGGCGuCGUGCc-ACACc -3'
miRNA:   3'- ggUCGAaCGACCGU-GCACGcuUGUGu -5'
19234 3' -53.9 NC_004684.1 + 59769 0.67 0.762098
Target:  5'- aCGGCgaGCUGGCucuCGaccggccaggagGCGAACACc -3'
miRNA:   3'- gGUCGaaCGACCGu--GCa-----------CGCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 34677 0.67 0.743462
Target:  5'- -aGGCcgUGC-GGUACGUcGUGAACGCGg -3'
miRNA:   3'- ggUCGa-ACGaCCGUGCA-CGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 57948 0.67 0.743462
Target:  5'- gCCuGCggUGCUcgcugcGGCugGUGCGcACGCu -3'
miRNA:   3'- -GGuCGa-ACGA------CCGugCACGCuUGUGu -5'
19234 3' -53.9 NC_004684.1 + 28716 0.68 0.722329
Target:  5'- uCCAgGCUUuCUGGCGCGUcuGCG-GCACc -3'
miRNA:   3'- -GGU-CGAAcGACCGUGCA--CGCuUGUGu -5'
19234 3' -53.9 NC_004684.1 + 40057 0.68 0.722329
Target:  5'- aCGGCUcucgucGUUGGUcaGCGUGCGGuCGCAg -3'
miRNA:   3'- gGUCGAa-----CGACCG--UGCACGCUuGUGU- -5'
19234 3' -53.9 NC_004684.1 + 63923 0.68 0.722329
Target:  5'- cCCGGCgugGCUGaGCuugggcgagACG-GCGAACACc -3'
miRNA:   3'- -GGUCGaa-CGAC-CG---------UGCaCGCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 43475 0.68 0.711621
Target:  5'- gCGGCggcaGCaGGUGCG-GCGGGCGCAg -3'
miRNA:   3'- gGUCGaa--CGaCCGUGCaCGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 18278 0.68 0.711621
Target:  5'- cCCGGCcgccUGCUGGCACcgaccgGCaagaagGAGCACAu -3'
miRNA:   3'- -GGUCGa---ACGACCGUGca----CG------CUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 47326 0.68 0.700835
Target:  5'- gCCAGCUUGa--GCGCGgccaCGAACGCGu -3'
miRNA:   3'- -GGUCGAACgacCGUGCac--GCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 39186 0.68 0.689983
Target:  5'- gUAGCgcagGCUGGCggugcuguccACGUGCGccucGCGCAg -3'
miRNA:   3'- gGUCGaa--CGACCG----------UGCACGCu---UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 3367 0.69 0.679074
Target:  5'- uCCAGCacGcCUGGCGCaagggGUGUGAgguGCACAu -3'
miRNA:   3'- -GGUCGaaC-GACCGUG-----CACGCU---UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 57194 0.69 0.672506
Target:  5'- uCCAGCgcucGCUGGCGCuggGCGGucuggaacuccucgaGCGCGg -3'
miRNA:   3'- -GGUCGaa--CGACCGUGca-CGCU---------------UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 10658 0.69 0.66812
Target:  5'- gCCGGUUcccgUGCUGGCGCG-GCaucAGCACc -3'
miRNA:   3'- -GGUCGA----ACGACCGUGCaCGc--UUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.