miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 5' -59.7 NC_004684.1 + 8182 0.66 0.517768
Target:  5'- gGCGCGcUGgGcCAGGCgCAGCuGAUCa -3'
miRNA:   3'- aCGCGCcACgC-GUCCG-GUCGcUUAGc -5'
19234 5' -59.7 NC_004684.1 + 50781 0.66 0.50767
Target:  5'- aGCGCGGUGagcauGCAGGaggccaCCAGCaGAcgCu -3'
miRNA:   3'- aCGCGCCACg----CGUCC------GGUCG-CUuaGc -5'
19234 5' -59.7 NC_004684.1 + 59700 0.66 0.50767
Target:  5'- cUGCGCGGgGUGCGGGU--GCGcAUCc -3'
miRNA:   3'- -ACGCGCCaCGCGUCCGguCGCuUAGc -5'
19234 5' -59.7 NC_004684.1 + 8482 0.66 0.50767
Target:  5'- gGCGgGGUgGgGCGGGgaCGGCGAGaCGg -3'
miRNA:   3'- aCGCgCCA-CgCGUCCg-GUCGCUUaGC- -5'
19234 5' -59.7 NC_004684.1 + 55942 0.66 0.506665
Target:  5'- -cCGUGGUGCGCGucggcccGGUCAGCuccGggUUGg -3'
miRNA:   3'- acGCGCCACGCGU-------CCGGUCG---CuuAGC- -5'
19234 5' -59.7 NC_004684.1 + 56873 0.66 0.50566
Target:  5'- gGCgaGCGGUGCGCcugaccgucggcGGcCCAGUGcGUCGg -3'
miRNA:   3'- aCG--CGCCACGCGu-----------CC-GGUCGCuUAGC- -5'
19234 5' -59.7 NC_004684.1 + 7856 0.66 0.504656
Target:  5'- cGCGCuGGcggugcaggaccugUGCGCAGGCCuaCGAcgCGc -3'
miRNA:   3'- aCGCG-CC--------------ACGCGUCCGGucGCUuaGC- -5'
19234 5' -59.7 NC_004684.1 + 64294 0.66 0.497656
Target:  5'- cGCGCaGUGCGCccuGGCCGucGUGGugGUUGa -3'
miRNA:   3'- aCGCGcCACGCGu--CCGGU--CGCU--UAGC- -5'
19234 5' -59.7 NC_004684.1 + 44914 0.66 0.497656
Target:  5'- gGCGuCGGUGCGC--GCCGG-GuAGUCGg -3'
miRNA:   3'- aCGC-GCCACGCGucCGGUCgC-UUAGC- -5'
19234 5' -59.7 NC_004684.1 + 55037 0.66 0.497656
Target:  5'- --gGUGGUGCGCAGugugcCCAGCGcgguGAUCa -3'
miRNA:   3'- acgCGCCACGCGUCc----GGUCGC----UUAGc -5'
19234 5' -59.7 NC_004684.1 + 26988 0.66 0.496659
Target:  5'- gGC-CGGUGCgagcgcgGCGGGCgCGGCG-AUCa -3'
miRNA:   3'- aCGcGCCACG-------CGUCCG-GUCGCuUAGc -5'
19234 5' -59.7 NC_004684.1 + 34248 0.67 0.49169
Target:  5'- cGgGCGGcaacugccuguggacUGCGCAGGCCaccgucagcaagGGCGGcgUGu -3'
miRNA:   3'- aCgCGCC---------------ACGCGUCCGG------------UCGCUuaGC- -5'
19234 5' -59.7 NC_004684.1 + 10899 0.67 0.487731
Target:  5'- cGaCGCGGUgaucGCGCuGGUCGGUGAAc-- -3'
miRNA:   3'- aC-GCGCCA----CGCGuCCGGUCGCUUagc -5'
19234 5' -59.7 NC_004684.1 + 67129 0.67 0.487731
Target:  5'- -aUGC-GUGCGCAGGCUguuGGCGAucagcUCGg -3'
miRNA:   3'- acGCGcCACGCGUCCGG---UCGCUu----AGC- -5'
19234 5' -59.7 NC_004684.1 + 34350 0.67 0.487731
Target:  5'- aGCGCGa-GCGCuuGGGCgGGCgGGAUCa -3'
miRNA:   3'- aCGCGCcaCGCG--UCCGgUCG-CUUAGc -5'
19234 5' -59.7 NC_004684.1 + 24990 0.67 0.487731
Target:  5'- cGCGuCGGcGCGUugGGGUCGGCGGGg-- -3'
miRNA:   3'- aCGC-GCCaCGCG--UCCGGUCGCUUagc -5'
19234 5' -59.7 NC_004684.1 + 65082 0.67 0.483788
Target:  5'- cUGCGCGGUGaucaugccgucgaGCAGGgUGGCGucguccgcGUCGa -3'
miRNA:   3'- -ACGCGCCACg------------CGUCCgGUCGCu-------UAGC- -5'
19234 5' -59.7 NC_004684.1 + 18833 0.67 0.477901
Target:  5'- aGCuCGGcGCGCAGGCCgaGGUGuggcaggaGGUCGg -3'
miRNA:   3'- aCGcGCCaCGCGUCCGG--UCGC--------UUAGC- -5'
19234 5' -59.7 NC_004684.1 + 41864 0.67 0.477901
Target:  5'- gGCGUGGUcugguacugGaCGCAGGCCcGCGAc--- -3'
miRNA:   3'- aCGCGCCA---------C-GCGUCCGGuCGCUuagc -5'
19234 5' -59.7 NC_004684.1 + 65424 0.67 0.46817
Target:  5'- cGCGCcaGGcgcUGCGCuGGCguGCGGcgCGc -3'
miRNA:   3'- aCGCG--CC---ACGCGuCCGguCGCUuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.