miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19235 5' -56.4 NC_004684.1 + 65372 0.66 0.717101
Target:  5'- -gCUgGCCUGgucaaCGUCGGGGCGGUCcagcGCCc -3'
miRNA:   3'- caGA-CGGAC-----GCAGUCCUGCUAG----UGGc -5'
19235 5' -56.4 NC_004684.1 + 40243 0.66 0.717101
Target:  5'- -cUUGCCgGUcUCGGGGCGGUCgACCu -3'
miRNA:   3'- caGACGGaCGcAGUCCUGCUAG-UGGc -5'
19235 5' -56.4 NC_004684.1 + 34298 0.66 0.706598
Target:  5'- ---cGCCUGCGUCGGcaGCGccaCGCCGg -3'
miRNA:   3'- cagaCGGACGCAGUCc-UGCua-GUGGC- -5'
19235 5' -56.4 NC_004684.1 + 54430 0.66 0.706598
Target:  5'- -cCUGCCgccGCGUCGGcGgGAgCACCGg -3'
miRNA:   3'- caGACGGa--CGCAGUCcUgCUaGUGGC- -5'
19235 5' -56.4 NC_004684.1 + 12387 0.66 0.706598
Target:  5'- uUgUGUCUGCGcUCGGuGgugcACGGUCGCCGu -3'
miRNA:   3'- cAgACGGACGC-AGUC-C----UGCUAGUGGC- -5'
19235 5' -56.4 NC_004684.1 + 59170 0.66 0.706598
Target:  5'- --gUGCCUGCGaaggugagCAGGuaGCGcUCGCCGu -3'
miRNA:   3'- cagACGGACGCa-------GUCC--UGCuAGUGGC- -5'
19235 5' -56.4 NC_004684.1 + 40017 0.66 0.696024
Target:  5'- ---aGCCUGCGUUAGcGGCGcagACCGg -3'
miRNA:   3'- cagaCGGACGCAGUC-CUGCuagUGGC- -5'
19235 5' -56.4 NC_004684.1 + 10738 0.66 0.696024
Target:  5'- uUCUGCCacgGgGUCAGGgACGAcuUCGgCGu -3'
miRNA:   3'- cAGACGGa--CgCAGUCC-UGCU--AGUgGC- -5'
19235 5' -56.4 NC_004684.1 + 51119 0.66 0.696024
Target:  5'- ---cGCC-GCGUCGGGcccggcGCGAaCACCGg -3'
miRNA:   3'- cagaCGGaCGCAGUCC------UGCUaGUGGC- -5'
19235 5' -56.4 NC_004684.1 + 59521 0.67 0.662917
Target:  5'- cGUCguagGCCUGCGcaCAGGuccugcaccgccaGCGcgCGCCGu -3'
miRNA:   3'- -CAGa---CGGACGCa-GUCC-------------UGCuaGUGGC- -5'
19235 5' -56.4 NC_004684.1 + 42802 0.67 0.653242
Target:  5'- cGUCcGCUguCGUCAGGACGugcUCGCCc -3'
miRNA:   3'- -CAGaCGGacGCAGUCCUGCu--AGUGGc -5'
19235 5' -56.4 NC_004684.1 + 48859 0.68 0.610157
Target:  5'- uGUCgcGCCagUGCGcgaaCGGGGCGAUgACCGg -3'
miRNA:   3'- -CAGa-CGG--ACGCa---GUCCUGCUAgUGGC- -5'
19235 5' -56.4 NC_004684.1 + 57522 0.68 0.609081
Target:  5'- -cCUGCgCgGCGUCGGGAucCGGcggcagcUCACCGg -3'
miRNA:   3'- caGACG-GaCGCAGUCCU--GCU-------AGUGGC- -5'
19235 5' -56.4 NC_004684.1 + 29936 0.68 0.567358
Target:  5'- -gCUGCCaGCGUgaAGGuguCGGUCACCu -3'
miRNA:   3'- caGACGGaCGCAg-UCCu--GCUAGUGGc -5'
19235 5' -56.4 NC_004684.1 + 61702 0.7 0.48459
Target:  5'- -gCUGCUccaccgGCGUCAGGAUGc-CACCGg -3'
miRNA:   3'- caGACGGa-----CGCAGUCCUGCuaGUGGC- -5'
19235 5' -56.4 NC_004684.1 + 24693 0.71 0.408039
Target:  5'- -cCUGCCgaccauuccagGCGUCAGcGACGAcaaCACCGa -3'
miRNA:   3'- caGACGGa----------CGCAGUC-CUGCUa--GUGGC- -5'
19235 5' -56.4 NC_004684.1 + 44878 0.72 0.38134
Target:  5'- -cCUGCCUGCGUCAGcuGCuGAauggCACCGa -3'
miRNA:   3'- caGACGGACGCAGUCc-UG-CUa---GUGGC- -5'
19235 5' -56.4 NC_004684.1 + 4031 0.73 0.323731
Target:  5'- cGUCgGCCgcucggUGCG-CuGGGCGGUCACCGg -3'
miRNA:   3'- -CAGaCGG------ACGCaGuCCUGCUAGUGGC- -5'
19235 5' -56.4 NC_004684.1 + 53683 0.73 0.301103
Target:  5'- ---cGCCUGgGUCGGGAUGAUCuuCGg -3'
miRNA:   3'- cagaCGGACgCAGUCCUGCUAGugGC- -5'
19235 5' -56.4 NC_004684.1 + 47031 0.75 0.246783
Target:  5'- cGUCggggugGCCUGCG-CGGuGACGGUgCACCGg -3'
miRNA:   3'- -CAGa-----CGGACGCaGUC-CUGCUA-GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.