miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19236 3' -57 NC_004684.1 + 16520 0.66 0.661506
Target:  5'- gUGGACAccgauGUG-GCCGCcgaggUUGAGCACa -3'
miRNA:   3'- aGCCUGU-----CACgCGGCGag---AACUCGUG- -5'
19236 3' -57 NC_004684.1 + 65758 0.66 0.650699
Target:  5'- gCGGGCGuugGcCGCCGCgcgCcggUGGGCGCg -3'
miRNA:   3'- aGCCUGUca-C-GCGGCGa--Ga--ACUCGUG- -5'
19236 3' -57 NC_004684.1 + 30778 0.66 0.639875
Target:  5'- gUGGACGGguggGUGCUGCUgUccGGCACc -3'
miRNA:   3'- aGCCUGUCa---CGCGGCGAgAacUCGUG- -5'
19236 3' -57 NC_004684.1 + 45601 0.66 0.635543
Target:  5'- cCGGACAGguccagcaccagcGCGUCGgUCUUGccggggaacaGGCGCa -3'
miRNA:   3'- aGCCUGUCa------------CGCGGCgAGAAC----------UCGUG- -5'
19236 3' -57 NC_004684.1 + 19794 0.67 0.596605
Target:  5'- aCGG-CGGUGUGCgGCcuacaUCgccGAGCACa -3'
miRNA:   3'- aGCCuGUCACGCGgCG-----AGaa-CUCGUG- -5'
19236 3' -57 NC_004684.1 + 20615 0.68 0.553797
Target:  5'- cCGGACGGUcgacgguuccuGCGCCGC-CUgcguccGCACg -3'
miRNA:   3'- aGCCUGUCA-----------CGCGGCGaGAacu---CGUG- -5'
19236 3' -57 NC_004684.1 + 35964 0.68 0.532724
Target:  5'- uUCGGcgucuccCAGUaCGCCacGUUCUUGGGCGCg -3'
miRNA:   3'- -AGCCu------GUCAcGCGG--CGAGAACUCGUG- -5'
19236 3' -57 NC_004684.1 + 47649 0.68 0.531678
Target:  5'- aCGGcCAGUGCggcguugGCCGC-CUUGAucaGCGCc -3'
miRNA:   3'- aGCCuGUCACG-------CGGCGaGAACU---CGUG- -5'
19236 3' -57 NC_004684.1 + 23765 0.68 0.511945
Target:  5'- uUCGGGCcGUGgGgCGCggCgUUGGGCGCg -3'
miRNA:   3'- -AGCCUGuCACgCgGCGa-G-AACUCGUG- -5'
19236 3' -57 NC_004684.1 + 25638 0.69 0.491509
Target:  5'- ---aACGGUGUGCCGUUCgaGAGCGg -3'
miRNA:   3'- agccUGUCACGCGGCGAGaaCUCGUg -5'
19236 3' -57 NC_004684.1 + 39718 0.69 0.481433
Target:  5'- cCGGACGGgucgGUgaacacaccaagGUCGCUCgUGGGCACc -3'
miRNA:   3'- aGCCUGUCa---CG------------CGGCGAGaACUCGUG- -5'
19236 3' -57 NC_004684.1 + 52519 0.69 0.471459
Target:  5'- gCGGACGG-GUGCCGgUCUUGAuGUc- -3'
miRNA:   3'- aGCCUGUCaCGCGGCgAGAACU-CGug -5'
19236 3' -57 NC_004684.1 + 16783 0.69 0.46159
Target:  5'- -gGGACcaGGUGCGgCGCgUCguguggUGGGCGCg -3'
miRNA:   3'- agCCUG--UCACGCgGCG-AGa-----ACUCGUG- -5'
19236 3' -57 NC_004684.1 + 41827 0.69 0.447959
Target:  5'- cCGGGUAGcgcaccuuccaccGCGCCgagGCUCUUGAGCACc -3'
miRNA:   3'- aGCCUGUCa------------CGCGG---CGAGAACUCGUG- -5'
19236 3' -57 NC_004684.1 + 34320 0.7 0.432659
Target:  5'- cCGGACAGauugagcaGCGCaauuUUCUUGAGCGCg -3'
miRNA:   3'- aGCCUGUCa-------CGCGgc--GAGAACUCGUG- -5'
19236 3' -57 NC_004684.1 + 52596 0.7 0.395785
Target:  5'- gUGGACAGcGCGCCGCcguagUUGuGCGCc -3'
miRNA:   3'- aGCCUGUCaCGCGGCGag---AACuCGUG- -5'
19236 3' -57 NC_004684.1 + 3228 0.71 0.369494
Target:  5'- cUGGAagaGGUGCGCCGCaUCcUGGGCc- -3'
miRNA:   3'- aGCCUg--UCACGCGGCG-AGaACUCGug -5'
19236 3' -57 NC_004684.1 + 34150 0.72 0.298033
Target:  5'- cUCGGGCGGcacgGUGCUGCUCaccGGCACg -3'
miRNA:   3'- -AGCCUGUCa---CGCGGCGAGaacUCGUG- -5'
19236 3' -57 NC_004684.1 + 36109 0.73 0.288643
Target:  5'- gCGGugGGUGCGCCuGCUggccuucgccacacCUguggGGGCGCa -3'
miRNA:   3'- aGCCugUCACGCGG-CGA--------------GAa---CUCGUG- -5'
19236 3' -57 NC_004684.1 + 43658 0.78 0.139871
Target:  5'- cCGaGCAGUGCGCCGCcagcgaUgUUGAGCGCg -3'
miRNA:   3'- aGCcUGUCACGCGGCG------AgAACUCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.