miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19236 5' -58.8 NC_004684.1 + 15700 0.66 0.587414
Target:  5'- cGACGCCaccgGCAUcGUGCUcccGGAGaCACCg -3'
miRNA:   3'- cCUGUGGg---CGUA-CGCGA---CCUC-GUGGg -5'
19236 5' -58.8 NC_004684.1 + 25700 0.66 0.587414
Target:  5'- -cGCACgCCGUcgccGCGCUGGGuGUugCCg -3'
miRNA:   3'- ccUGUG-GGCGua--CGCGACCU-CGugGG- -5'
19236 5' -58.8 NC_004684.1 + 62272 0.66 0.587414
Target:  5'- cGGugGCCUucaGCAgguccagGCGCUGcuccAGCGCCg -3'
miRNA:   3'- -CCugUGGG---CGUa------CGCGACc---UCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 3883 0.66 0.58112
Target:  5'- cGACGCCaggccgcccugcuggCGCAggcGCaGCUGGAggccucGCGCCCc -3'
miRNA:   3'- cCUGUGG---------------GCGUa--CG-CGACCU------CGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 61679 0.66 0.576932
Target:  5'- cGGCAUCUGCG-GCGCgagGGcGCGCUg -3'
miRNA:   3'- cCUGUGGGCGUaCGCGa--CCuCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 17064 0.66 0.576932
Target:  5'- aGGcCGCCCGCcUG-GCcGGGcGCACCg -3'
miRNA:   3'- -CCuGUGGGCGuACgCGaCCU-CGUGGg -5'
19236 5' -58.8 NC_004684.1 + 17631 0.66 0.576932
Target:  5'- aGGAgauCACCC----GCGCUGGuGCGCuCCg -3'
miRNA:   3'- -CCU---GUGGGcguaCGCGACCuCGUG-GG- -5'
19236 5' -58.8 NC_004684.1 + 41611 0.66 0.576932
Target:  5'- -aACACCgGCGUGcCGCcggUGGAGCcggACgCCa -3'
miRNA:   3'- ccUGUGGgCGUAC-GCG---ACCUCG---UG-GG- -5'
19236 5' -58.8 NC_004684.1 + 65764 0.66 0.576932
Target:  5'- cGG-UACCCGguUGCGCcGGugcaGGUGCCg -3'
miRNA:   3'- -CCuGUGGGCguACGCGaCC----UCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 56176 0.66 0.576932
Target:  5'- cGACGaCgGCG-GCGCUaucGAGCGCCCg -3'
miRNA:   3'- cCUGUgGgCGUaCGCGAc--CUCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 1055 0.66 0.576932
Target:  5'- cGGCACCgGU-UGUGCUGGcuggcGGCGCUg -3'
miRNA:   3'- cCUGUGGgCGuACGCGACC-----UCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 20873 0.66 0.570663
Target:  5'- aGGGCAaggaCCGUgcgGCGCUGaucgcugagugggacGAGUACCUg -3'
miRNA:   3'- -CCUGUg---GGCGua-CGCGAC---------------CUCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 29359 0.66 0.566492
Target:  5'- uGGACcuguccgucCCCGCugagGCGUUGuGGCACCa -3'
miRNA:   3'- -CCUGu--------GGGCGua--CGCGACcUCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 14153 0.66 0.566492
Target:  5'- aGGACuCCauCGCGgucggcaaGCGUUGcGAGCACUCg -3'
miRNA:   3'- -CCUGuGG--GCGUa-------CGCGAC-CUCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 36096 0.66 0.566492
Target:  5'- gGGAgGCaaGCGcGCGgUGGGuGCGCCUg -3'
miRNA:   3'- -CCUgUGggCGUaCGCgACCU-CGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 60746 0.66 0.566492
Target:  5'- cGACACCgCGC-UGCaCgucagGGAGCacgGCCCu -3'
miRNA:   3'- cCUGUGG-GCGuACGcGa----CCUCG---UGGG- -5'
19236 5' -58.8 NC_004684.1 + 42619 0.67 0.556101
Target:  5'- cGGCACcucccccgccgCCGCcgGUGCUGGuGcCGCCa -3'
miRNA:   3'- cCUGUG-----------GGCGuaCGCGACCuC-GUGGg -5'
19236 5' -58.8 NC_004684.1 + 45247 0.67 0.556101
Target:  5'- aGGC-CCgGCAgccaGCGCUGGucGCgGCCCu -3'
miRNA:   3'- cCUGuGGgCGUa---CGCGACCu-CG-UGGG- -5'
19236 5' -58.8 NC_004684.1 + 44130 0.67 0.556101
Target:  5'- --uCGCCCGCGU-CGUU-GAGCACCa -3'
miRNA:   3'- ccuGUGGGCGUAcGCGAcCUCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 43708 0.67 0.556101
Target:  5'- uGGGCAgCuuGgAUGCGCUGGuauGCCUg -3'
miRNA:   3'- -CCUGU-GggCgUACGCGACCucgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.