miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 3' -62.4 NC_004684.1 + 41622 0.66 0.454217
Target:  5'- gCC-GCCGGuGGAGCCggacGCCAGgCCggggaucgcGCCGu -3'
miRNA:   3'- gGGaUGGCC-CCUCGG----UGGUC-GG---------UGGC- -5'
19237 3' -62.4 NC_004684.1 + 51428 0.66 0.454217
Target:  5'- -aCUGCUggaguucgGGGGAGCCGuagcucaugcgcCCGGUgGCCGa -3'
miRNA:   3'- ggGAUGG--------CCCCUCGGU------------GGUCGgUGGC- -5'
19237 3' -62.4 NC_004684.1 + 52869 0.66 0.443206
Target:  5'- gCCaguuagGCCaGGGucaccgucacguGCCACCGGCgACCGg -3'
miRNA:   3'- -GGga----UGGcCCCu-----------CGGUGGUCGgUGGC- -5'
19237 3' -62.4 NC_004684.1 + 9666 0.66 0.435949
Target:  5'- gCCgcCUGGGcGuGCCACCAGUCcuugGCCa -3'
miRNA:   3'- gGGauGGCCC-CuCGGUGGUCGG----UGGc -5'
19237 3' -62.4 NC_004684.1 + 7949 0.66 0.435949
Target:  5'- aCCggcgcacACCGGuGGgcaaGGCCGCCAGgCgGCCGu -3'
miRNA:   3'- gGGa------UGGCC-CC----UCGGUGGUC-GgUGGC- -5'
19237 3' -62.4 NC_004684.1 + 10384 0.66 0.435949
Target:  5'- aCC-GCCGGGuaccaGGCCGCCAGCgugcagaaccaCGCCa -3'
miRNA:   3'- gGGaUGGCCCc----UCGGUGGUCG-----------GUGGc -5'
19237 3' -62.4 NC_004684.1 + 20769 0.66 0.435949
Target:  5'- gUCCacACCGGaGGcgguGGCC-CCgaAGCCACCGg -3'
miRNA:   3'- -GGGa-UGGCC-CC----UCGGuGG--UCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 4610 0.66 0.435949
Target:  5'- aCCCcGCCGGGcAGgCACCAaCCACa- -3'
miRNA:   3'- -GGGaUGGCCCcUCgGUGGUcGGUGgc -5'
19237 3' -62.4 NC_004684.1 + 51492 0.66 0.435047
Target:  5'- cCUCUGCCGGGacgcccugcggcuGcacagGGCCGCUGGCgGCCa -3'
miRNA:   3'- -GGGAUGGCCC-------------C-----UCGGUGGUCGgUGGc -5'
19237 3' -62.4 NC_004684.1 + 25174 0.66 0.435047
Target:  5'- gCCgacACCGGcGGccacgucGGCCACCAGCU-CCa -3'
miRNA:   3'- gGGa--UGGCC-CC-------UCGGUGGUCGGuGGc -5'
19237 3' -62.4 NC_004684.1 + 41823 0.66 0.426975
Target:  5'- aCC-ACCc-GGAGgCGCUGGCCACCGa -3'
miRNA:   3'- gGGaUGGccCCUCgGUGGUCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 27084 0.66 0.418112
Target:  5'- gCCUGCCGGGc-GCUAC--GCCAUCGa -3'
miRNA:   3'- gGGAUGGCCCcuCGGUGguCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 14717 0.66 0.418112
Target:  5'- gCCaACCGGGucaaaGAGgUGCUGGCCACCu -3'
miRNA:   3'- gGGaUGGCCC-----CUCgGUGGUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 40965 0.66 0.418112
Target:  5'- gCC-ACCGGcGGcgaaccccGCUGCCAGCgCGCCGg -3'
miRNA:   3'- gGGaUGGCC-CCu-------CGGUGGUCG-GUGGC- -5'
19237 3' -62.4 NC_004684.1 + 17338 0.66 0.418112
Target:  5'- gCUCgACCGGuuccuggccuGGAGCCaggcACCGGCCACg- -3'
miRNA:   3'- -GGGaUGGCC----------CCUCGG----UGGUCGGUGgc -5'
19237 3' -62.4 NC_004684.1 + 45080 0.66 0.418112
Target:  5'- gCCa--CGGGGAGCaucgggguucggCACC-GCCGCCGc -3'
miRNA:   3'- gGGaugGCCCCUCG------------GUGGuCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 41525 0.66 0.418112
Target:  5'- gCCCggccugGCCGaGGccguugaacaGGCCGCCgagcaucuGGCCGCCGa -3'
miRNA:   3'- -GGGa-----UGGCcCC----------UCGGUGG--------UCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 2711 0.66 0.417231
Target:  5'- gCCggUGCCGGGGGcaagugcGCCACaccgcaCGGCCACaCGu -3'
miRNA:   3'- gGG--AUGGCCCCU-------CGGUG------GUCGGUG-GC- -5'
19237 3' -62.4 NC_004684.1 + 55570 0.66 0.409361
Target:  5'- gCCCggugGCCGGGG-GU--CCAGgCACCa -3'
miRNA:   3'- -GGGa---UGGCCCCuCGguGGUCgGUGGc -5'
19237 3' -62.4 NC_004684.1 + 6767 0.66 0.409361
Target:  5'- aCCCUGCgcaUGGGcgacgugcgccGGGUgACCGGCCugCGc -3'
miRNA:   3'- -GGGAUG---GCCC-----------CUCGgUGGUCGGugGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.