miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 3' -62.4 NC_004684.1 + 54677 1.1 0.000263
Target:  5'- uCCCUACCGGGGAGCCACCAGCCACCGg -3'
miRNA:   3'- -GGGAUGGCCCCUCGGUGGUCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 48951 0.83 0.02915
Target:  5'- gUCCUGCUcGGGAGCCACguCGGCCGCCGg -3'
miRNA:   3'- -GGGAUGGcCCCUCGGUG--GUCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 12882 0.8 0.043995
Target:  5'- gCCgccGCCGGGGAGCCugCGcucGCCGCCa -3'
miRNA:   3'- gGGa--UGGCCCCUCGGugGU---CGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 42059 0.8 0.046465
Target:  5'- gCC-ACCGGGGAgGCCGCCAuacGCCGCCa -3'
miRNA:   3'- gGGaUGGCCCCU-CGGUGGU---CGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 48249 0.79 0.060985
Target:  5'- gCCUUGCCGGGGAGgCGuccguugucgUCGGCCACCa -3'
miRNA:   3'- -GGGAUGGCCCCUCgGU----------GGUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 56687 0.76 0.098839
Target:  5'- gCCCUGCCGGuugcGAGCCACCGcGUC-CCGa -3'
miRNA:   3'- -GGGAUGGCCc---CUCGGUGGU-CGGuGGC- -5'
19237 3' -62.4 NC_004684.1 + 29748 0.75 0.101494
Target:  5'- gCCUgACCGGGcGGCCaugGCCAGCgCACCGa -3'
miRNA:   3'- gGGA-UGGCCCcUCGG---UGGUCG-GUGGC- -5'
19237 3' -62.4 NC_004684.1 + 63746 0.75 0.109866
Target:  5'- aCCCggcACCGGGcGGCCACUAGUUugCGg -3'
miRNA:   3'- -GGGa--UGGCCCcUCGGUGGUCGGugGC- -5'
19237 3' -62.4 NC_004684.1 + 1531 0.75 0.115803
Target:  5'- cCCCU-CCGaGGuGGCCACCAGCgGCCc -3'
miRNA:   3'- -GGGAuGGC-CCcUCGGUGGUCGgUGGc -5'
19237 3' -62.4 NC_004684.1 + 4235 0.74 0.139012
Target:  5'- gCCUGCgCGGcgcgcaGGAGCCGCacuCGGCCACCa -3'
miRNA:   3'- gGGAUG-GCC------CCUCGGUG---GUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 37197 0.73 0.142657
Target:  5'- aCUcGCCGGGuuugguGGCCACCAGCuCGCCGc -3'
miRNA:   3'- gGGaUGGCCCc-----UCGGUGGUCG-GUGGC- -5'
19237 3' -62.4 NC_004684.1 + 53287 0.73 0.14639
Target:  5'- aCCC-ACCGGGGcugAGCCAcaccacCCGGUCACCc -3'
miRNA:   3'- -GGGaUGGCCCC---UCGGU------GGUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 30472 0.73 0.14639
Target:  5'- aCCCggccucgACCGGuGcGAuGCCACCGGCCAguCCGa -3'
miRNA:   3'- -GGGa------UGGCC-C-CU-CGGUGGUCGGU--GGC- -5'
19237 3' -62.4 NC_004684.1 + 53175 0.73 0.150211
Target:  5'- gCCU-CCGGGGAcagGCCgACCGcGCCGCUGg -3'
miRNA:   3'- gGGAuGGCCCCU---CGG-UGGU-CGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 58159 0.73 0.158127
Target:  5'- ---cACCGGGGAGCCggugcgacuguGCC-GCCACCa -3'
miRNA:   3'- gggaUGGCCCCUCGG-----------UGGuCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 19267 0.73 0.158127
Target:  5'- gCCCUGCCGccGGAGCCGg-AGCCACCu -3'
miRNA:   3'- -GGGAUGGCc-CCUCGGUggUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 59345 0.73 0.162225
Target:  5'- aCCCUGCUGGcgcuGGAGgaCCGCCAGCCGaCGu -3'
miRNA:   3'- -GGGAUGGCC----CCUC--GGUGGUCGGUgGC- -5'
19237 3' -62.4 NC_004684.1 + 13696 0.72 0.175097
Target:  5'- cCCCUACCGGucGGCCAaccagguguuCCGGcCCACCc -3'
miRNA:   3'- -GGGAUGGCCccUCGGU----------GGUC-GGUGGc -5'
19237 3' -62.4 NC_004684.1 + 18351 0.72 0.175097
Target:  5'- gCCUGCCgaggaGGaGGAGCCugcGCCGGUgGCCGa -3'
miRNA:   3'- gGGAUGG-----CC-CCUCGG---UGGUCGgUGGC- -5'
19237 3' -62.4 NC_004684.1 + 20246 0.72 0.179586
Target:  5'- cUCCUgggcACCGGG--GCCGCCuacGCCACCGa -3'
miRNA:   3'- -GGGA----UGGCCCcuCGGUGGu--CGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.