miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 3' -62.4 NC_004684.1 + 27590 0.66 0.409361
Target:  5'- gUCCgacauggACCGGcGcAGCUACCAGCgCAUCGa -3'
miRNA:   3'- -GGGa------UGGCC-CcUCGGUGGUCG-GUGGC- -5'
19237 3' -62.4 NC_004684.1 + 45628 0.66 0.409361
Target:  5'- gUCUUGCCGGGGAacagGCgCAgCGcGCgGCCGa -3'
miRNA:   3'- -GGGAUGGCCCCU----CG-GUgGU-CGgUGGC- -5'
19237 3' -62.4 NC_004684.1 + 55570 0.66 0.409361
Target:  5'- gCCCggugGCCGGGG-GU--CCAGgCACCa -3'
miRNA:   3'- -GGGa---UGGCCCCuCGguGGUCgGUGGc -5'
19237 3' -62.4 NC_004684.1 + 11440 0.66 0.400725
Target:  5'- aCCCggagcugACCGGGccGAcGCgCACCAcgGUCACCGa -3'
miRNA:   3'- -GGGa------UGGCCC--CU-CG-GUGGU--CGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 1927 0.66 0.400725
Target:  5'- gCCUGCCGGGccuGgUACCGGCgCACgGu -3'
miRNA:   3'- gGGAUGGCCCcu-CgGUGGUCG-GUGgC- -5'
19237 3' -62.4 NC_004684.1 + 36852 0.66 0.400725
Target:  5'- aCCCgcgACUGGucGGAGCCGUCGGCggugaacuuCACCGa -3'
miRNA:   3'- -GGGa--UGGCC--CCUCGGUGGUCG---------GUGGC- -5'
19237 3' -62.4 NC_004684.1 + 5867 0.66 0.400725
Target:  5'- aCUggcagGCCGGGcAG-CACCAGCCugACCGg -3'
miRNA:   3'- gGGa----UGGCCCcUCgGUGGUCGG--UGGC- -5'
19237 3' -62.4 NC_004684.1 + 58424 0.66 0.400725
Target:  5'- aCCCcGCCGGuu-GCCuCCGGCCccguGCCGg -3'
miRNA:   3'- -GGGaUGGCCccuCGGuGGUCGG----UGGC- -5'
19237 3' -62.4 NC_004684.1 + 19023 0.67 0.392207
Target:  5'- gUCU-CCGGGuuGgCACCGGCgGCCGg -3'
miRNA:   3'- gGGAuGGCCCcuCgGUGGUCGgUGGC- -5'
19237 3' -62.4 NC_004684.1 + 33233 0.67 0.383807
Target:  5'- gCgUGCCGGuGAGCagCACCGuGCCGCCc -3'
miRNA:   3'- gGgAUGGCCcCUCG--GUGGU-CGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 29850 0.67 0.383807
Target:  5'- gUCC-ACCGGcGGGUCAUC-GCCGCCGc -3'
miRNA:   3'- -GGGaUGGCCcCUCGGUGGuCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 60866 0.67 0.375527
Target:  5'- gUCUUGCaCGGcGGAcagacCCGCCAGCC-CCGa -3'
miRNA:   3'- -GGGAUG-GCC-CCUc----GGUGGUCGGuGGC- -5'
19237 3' -62.4 NC_004684.1 + 11831 0.67 0.375527
Target:  5'- cCCCggccACCGGGccacGGCgGCCAGCgGCgCGa -3'
miRNA:   3'- -GGGa---UGGCCCc---UCGgUGGUCGgUG-GC- -5'
19237 3' -62.4 NC_004684.1 + 49105 0.67 0.367369
Target:  5'- uUCUUGCCGGucGGuGCCAgCAGgCgGCCGg -3'
miRNA:   3'- -GGGAUGGCC--CCuCGGUgGUC-GgUGGC- -5'
19237 3' -62.4 NC_004684.1 + 35063 0.67 0.367369
Target:  5'- uUCCgcgACCGGuGGAGCuucgcgcucaacCAUCAGCCGUCGg -3'
miRNA:   3'- -GGGa--UGGCC-CCUCG------------GUGGUCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 39624 0.67 0.367369
Target:  5'- cUCCUGgCGGGGGucgcGCgGCaCGGUCACCu -3'
miRNA:   3'- -GGGAUgGCCCCU----CGgUG-GUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 2980 0.67 0.367369
Target:  5'- gCCCUggACgGcGGGGGCgCACCuucGUCACCa -3'
miRNA:   3'- -GGGA--UGgC-CCCUCG-GUGGu--CGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 5957 0.67 0.367369
Target:  5'- aCCUggccgcGCCGGuGAGCgACCGGCCGagcaagucCCGg -3'
miRNA:   3'- gGGA------UGGCCcCUCGgUGGUCGGU--------GGC- -5'
19237 3' -62.4 NC_004684.1 + 7095 0.67 0.36656
Target:  5'- gCCCUggaggccGCCGaGGaccGGGCCACgCAaccGCCACCGc -3'
miRNA:   3'- -GGGA-------UGGC-CC---CUCGGUG-GU---CGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 25934 0.67 0.36656
Target:  5'- aCC-GCCGGGGucAGCCcacugacACCGGCggCACCGc -3'
miRNA:   3'- gGGaUGGCCCC--UCGG-------UGGUCG--GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.