miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 3' -62.4 NC_004684.1 + 735 0.72 0.18887
Target:  5'- gCCggugACCGGGccGCCGCCgaGGCCAUCGu -3'
miRNA:   3'- gGGa---UGGCCCcuCGGUGG--UCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 1531 0.75 0.115803
Target:  5'- cCCCU-CCGaGGuGGCCACCAGCgGCCc -3'
miRNA:   3'- -GGGAuGGC-CCcUCGGUGGUCGgUGGc -5'
19237 3' -62.4 NC_004684.1 + 1927 0.66 0.400725
Target:  5'- gCCUGCCGGGccuGgUACCGGCgCACgGu -3'
miRNA:   3'- gGGAUGGCCCcu-CgGUGGUCG-GUGgC- -5'
19237 3' -62.4 NC_004684.1 + 2039 0.69 0.279196
Target:  5'- gCCCUggugGCCcuGGGGGCCGCCaucguGGCCugCc -3'
miRNA:   3'- -GGGA----UGGc-CCCUCGGUGG-----UCGGugGc -5'
19237 3' -62.4 NC_004684.1 + 2711 0.66 0.417231
Target:  5'- gCCggUGCCGGGGGcaagugcGCCACaccgcaCGGCCACaCGu -3'
miRNA:   3'- gGG--AUGGCCCCU-------CGGUG------GUCGGUG-GC- -5'
19237 3' -62.4 NC_004684.1 + 2980 0.67 0.367369
Target:  5'- gCCCUggACgGcGGGGGCgCACCuucGUCACCa -3'
miRNA:   3'- -GGGA--UGgC-CCCUCG-GUGGu--CGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 3678 0.68 0.313739
Target:  5'- aCCCUGuuGGcacgcuggcaGGAGaUCGCCAgcGCCGCCGc -3'
miRNA:   3'- -GGGAUggCC----------CCUC-GGUGGU--CGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 4154 0.71 0.22146
Target:  5'- -gCUGCuCGGGccgacgcccggcaacGAGCCGCCGGUgGCCGa -3'
miRNA:   3'- ggGAUG-GCCC---------------CUCGGUGGUCGgUGGC- -5'
19237 3' -62.4 NC_004684.1 + 4235 0.74 0.139012
Target:  5'- gCCUGCgCGGcgcgcaGGAGCCGCacuCGGCCACCa -3'
miRNA:   3'- gGGAUG-GCC------CCUCGGUG---GUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 4277 0.66 0.409361
Target:  5'- cCUCUACCcGGaGAcaauGCCGCCGGgUCGCCGu -3'
miRNA:   3'- -GGGAUGGcCC-CU----CGGUGGUC-GGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 4610 0.66 0.435949
Target:  5'- aCCCcGCCGGGcAGgCACCAaCCACa- -3'
miRNA:   3'- -GGGaUGGCCCcUCgGUGGUcGGUGgc -5'
19237 3' -62.4 NC_004684.1 + 5867 0.66 0.400725
Target:  5'- aCUggcagGCCGGGcAG-CACCAGCCugACCGg -3'
miRNA:   3'- gGGa----UGGCCCcUCgGUGGUCGG--UGGC- -5'
19237 3' -62.4 NC_004684.1 + 5957 0.67 0.367369
Target:  5'- aCCUggccgcGCCGGuGAGCgACCGGCCGagcaagucCCGg -3'
miRNA:   3'- gGGA------UGGCCcCUCGgUGGUCGGU--------GGC- -5'
19237 3' -62.4 NC_004684.1 + 6417 0.69 0.292638
Target:  5'- aCC-ACCGaGGccGAcGCCACCAGCCACg- -3'
miRNA:   3'- gGGaUGGC-CC--CU-CGGUGGUCGGUGgc -5'
19237 3' -62.4 NC_004684.1 + 6646 0.7 0.241822
Target:  5'- cCCCcACCcGGcGGCCAcCCGGUCGCCGg -3'
miRNA:   3'- -GGGaUGGcCCcUCGGU-GGUCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 6767 0.66 0.409361
Target:  5'- aCCCUGCgcaUGGGcgacgugcgccGGGUgACCGGCCugCGc -3'
miRNA:   3'- -GGGAUG---GCCC-----------CUCGgUGGUCGGugGC- -5'
19237 3' -62.4 NC_004684.1 + 7095 0.67 0.36656
Target:  5'- gCCCUggaggccGCCGaGGaccGGGCCACgCAaccGCCACCGc -3'
miRNA:   3'- -GGGA-------UGGC-CC---CUCGGUG-GU---CGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 7896 0.67 0.359334
Target:  5'- gCCCggugcuCCGuuGGGGCCGCUGGCCGCg- -3'
miRNA:   3'- -GGGau----GGCc-CCUCGGUGGUCGGUGgc -5'
19237 3' -62.4 NC_004684.1 + 7900 0.7 0.241822
Target:  5'- gCgUGCCcuGGuGGCCGCCAGCCAgCCGg -3'
miRNA:   3'- gGgAUGGc-CCcUCGGUGGUCGGU-GGC- -5'
19237 3' -62.4 NC_004684.1 + 7949 0.66 0.435949
Target:  5'- aCCggcgcacACCGGuGGgcaaGGCCGCCAGgCgGCCGu -3'
miRNA:   3'- gGGa------UGGCC-CC----UCGGUGGUC-GgUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.