miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 3' -62.4 NC_004684.1 + 51021 0.69 0.292638
Target:  5'- gCCCUGCUGGuccaccggcaGGAuGCgGCCA-CCGCCGg -3'
miRNA:   3'- -GGGAUGGCC----------CCU-CGgUGGUcGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 48994 0.71 0.212362
Target:  5'- gCCCUGCUGGccGGGCCcgACCccgcugaacagaucGGCCACCGg -3'
miRNA:   3'- -GGGAUGGCCc-CUCGG--UGG--------------UCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 7900 0.7 0.241822
Target:  5'- gCgUGCCcuGGuGGCCGCCAGCCAgCCGg -3'
miRNA:   3'- gGgAUGGc-CCcUCGGUGGUCGGU-GGC- -5'
19237 3' -62.4 NC_004684.1 + 42853 0.7 0.259962
Target:  5'- aCgaGCgCGGuGGGGCCaACCAgGCCGCCGc -3'
miRNA:   3'- gGgaUG-GCC-CCUCGG-UGGU-CGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 29049 0.69 0.272015
Target:  5'- aCCC-ACCGGGGugugcAGCUgaACCAGuuccugcCCACCGa -3'
miRNA:   3'- -GGGaUGGCCCC-----UCGG--UGGUC-------GGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 10019 0.69 0.285855
Target:  5'- aCCUGCCGcgcgccgaccGGGAGCgCAUCAucGCCACgCGu -3'
miRNA:   3'- gGGAUGGC----------CCCUCG-GUGGU--CGGUG-GC- -5'
19237 3' -62.4 NC_004684.1 + 54211 0.69 0.288553
Target:  5'- gCCUGCuCGGGGccgaggucGGCCAgCAGCUguuccagggcaccgcGCCGg -3'
miRNA:   3'- gGGAUG-GCCCC--------UCGGUgGUCGG---------------UGGC- -5'
19237 3' -62.4 NC_004684.1 + 18404 0.69 0.291954
Target:  5'- aCCUAcuacuucggcggcCCGGcGGGCgCACCGGCgGCCGa -3'
miRNA:   3'- gGGAU-------------GGCCcCUCG-GUGGUCGgUGGC- -5'
19237 3' -62.4 NC_004684.1 + 19918 0.69 0.292638
Target:  5'- cUCCUggACCuGGGAuaCACCGGCCuaACCGa -3'
miRNA:   3'- -GGGA--UGGcCCCUcgGUGGUCGG--UGGC- -5'
19237 3' -62.4 NC_004684.1 + 54286 0.71 0.193669
Target:  5'- aCCCgGCCGGGGGugcGCgCAUCGGCCcCCu -3'
miRNA:   3'- -GGGaUGGCCCCU---CG-GUGGUCGGuGGc -5'
19237 3' -62.4 NC_004684.1 + 23574 0.71 0.193669
Target:  5'- gCCUGCCGGGccGCgcgaaCACC-GCCGCCGg -3'
miRNA:   3'- gGGAUGGCCCcuCG-----GUGGuCGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 58159 0.73 0.158127
Target:  5'- ---cACCGGGGAGCCggugcgacuguGCC-GCCACCa -3'
miRNA:   3'- gggaUGGCCCCUCGG-----------UGGuCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 12882 0.8 0.043995
Target:  5'- gCCgccGCCGGGGAGCCugCGcucGCCGCCa -3'
miRNA:   3'- gGGa--UGGCCCCUCGGugGU---CGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 48249 0.79 0.060985
Target:  5'- gCCUUGCCGGGGAGgCGuccguugucgUCGGCCACCa -3'
miRNA:   3'- -GGGAUGGCCCCUCgGU----------GGUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 63746 0.75 0.109866
Target:  5'- aCCCggcACCGGGcGGCCACUAGUUugCGg -3'
miRNA:   3'- -GGGa--UGGCCCcUCGGUGGUCGGugGC- -5'
19237 3' -62.4 NC_004684.1 + 1531 0.75 0.115803
Target:  5'- cCCCU-CCGaGGuGGCCACCAGCgGCCc -3'
miRNA:   3'- -GGGAuGGC-CCcUCGGUGGUCGgUGGc -5'
19237 3' -62.4 NC_004684.1 + 4235 0.74 0.139012
Target:  5'- gCCUGCgCGGcgcgcaGGAGCCGCacuCGGCCACCa -3'
miRNA:   3'- gGGAUG-GCC------CCUCGGUG---GUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 53287 0.73 0.14639
Target:  5'- aCCC-ACCGGGGcugAGCCAcaccacCCGGUCACCc -3'
miRNA:   3'- -GGGaUGGCCCC---UCGGU------GGUCGGUGGc -5'
19237 3' -62.4 NC_004684.1 + 53175 0.73 0.150211
Target:  5'- gCCU-CCGGGGAcagGCCgACCGcGCCGCUGg -3'
miRNA:   3'- gGGAuGGCCCCU---CGG-UGGU-CGGUGGC- -5'
19237 3' -62.4 NC_004684.1 + 19267 0.73 0.158127
Target:  5'- gCCCUGCCGccGGAGCCGg-AGCCACCu -3'
miRNA:   3'- -GGGAUGGCc-CCUCGGUggUCGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.