miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 5' -53.9 NC_004684.1 + 42187 0.66 0.844213
Target:  5'- cGCGGUgagcaGUgGGCCGUggagcUGguGGCCg -3'
miRNA:   3'- cUGCCA-----CAgCUGGCAaaa--GCguCCGG- -5'
19237 5' -53.9 NC_004684.1 + 3800 0.66 0.844213
Target:  5'- aGGCGGUaaCcACCGccgcgccgCGCAGGCCg -3'
miRNA:   3'- -CUGCCAcaGcUGGCaaaa----GCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 31400 0.66 0.844213
Target:  5'- cGGCGGgcaccacccCGACUGUg--CGCcAGGCCu -3'
miRNA:   3'- -CUGCCaca------GCUGGCAaaaGCG-UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 28252 0.66 0.840775
Target:  5'- cGCGGUGgaccCGGCCagccuggugCGCgAGGCCg -3'
miRNA:   3'- cUGCCACa---GCUGGcaaaa----GCG-UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 18347 0.66 0.835553
Target:  5'- -cCGGaGcCGACCGgcggCGCGGuGCCg -3'
miRNA:   3'- cuGCCaCaGCUGGCaaaaGCGUC-CGG- -5'
19237 5' -53.9 NC_004684.1 + 32920 0.66 0.835553
Target:  5'- cGGCGGUGcCgGACCGgg--UGCcucgggcaggauGGGCCg -3'
miRNA:   3'- -CUGCCACaG-CUGGCaaaaGCG------------UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 53529 0.66 0.835553
Target:  5'- gGACGGUGUCG-UCGg---UGCGGcguGCCu -3'
miRNA:   3'- -CUGCCACAGCuGGCaaaaGCGUC---CGG- -5'
19237 5' -53.9 NC_004684.1 + 33486 0.66 0.826686
Target:  5'- uGCGGUGgacgcggcggCGGCCcuGUacUCGCGGGCg -3'
miRNA:   3'- cUGCCACa---------GCUGG--CAaaAGCGUCCGg -5'
19237 5' -53.9 NC_004684.1 + 66489 0.66 0.826686
Target:  5'- uGGCGGcuaggccuUGgcggCGGCC----UCGCGGGCCg -3'
miRNA:   3'- -CUGCC--------ACa---GCUGGcaaaAGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 14211 0.66 0.826686
Target:  5'- aGCGGcgcgGUCGGCCuGUcccCGgAGGCCu -3'
miRNA:   3'- cUGCCa---CAGCUGG-CAaaaGCgUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 66821 0.66 0.824888
Target:  5'- cGACGGUGgccUCGGCCuuguccuccUCGguGGCg -3'
miRNA:   3'- -CUGCCAC---AGCUGGcaaa-----AGCguCCGg -5'
19237 5' -53.9 NC_004684.1 + 43815 0.67 0.817619
Target:  5'- cGGCGGUGUUcGCgCGgcccgGCAGGCUg -3'
miRNA:   3'- -CUGCCACAGcUG-GCaaaagCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 32731 0.67 0.808362
Target:  5'- cACGGccuacaUCGACCGguacgUCGC-GGCCg -3'
miRNA:   3'- cUGCCac----AGCUGGCaaa--AGCGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 27791 0.67 0.808362
Target:  5'- cGACGGUGcgCGGCgGUUcggUC-CuGGCCu -3'
miRNA:   3'- -CUGCCACa-GCUGgCAAa--AGcGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 66750 0.67 0.808362
Target:  5'- -uCGGUGUCcuuggggucGCCGUgcUCGUcGGCCa -3'
miRNA:   3'- cuGCCACAGc--------UGGCAaaAGCGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 47116 0.67 0.798926
Target:  5'- -cUGGUGUCGaccacagggGCCGggaacgCGCcGGGCCg -3'
miRNA:   3'- cuGCCACAGC---------UGGCaaaa--GCG-UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 57162 0.67 0.795103
Target:  5'- cGGCGGUGgcCGACgCGcacgcucgggCGCAGGCg -3'
miRNA:   3'- -CUGCCACa-GCUG-GCaaaa------GCGUCCGg -5'
19237 5' -53.9 NC_004684.1 + 34249 0.67 0.789319
Target:  5'- gGGCGGcaacugccUGUgGACUG----CGCAGGCCa -3'
miRNA:   3'- -CUGCC--------ACAgCUGGCaaaaGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 45323 0.67 0.779553
Target:  5'- uGCGGUGUCccgguagccaGACUGUgccuggCGCuGGCUg -3'
miRNA:   3'- cUGCCACAG----------CUGGCAaaa---GCGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 39172 0.67 0.779553
Target:  5'- --gGGUGggCGGCCaGguagCGCAGGCUg -3'
miRNA:   3'- cugCCACa-GCUGG-CaaaaGCGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.