miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 3' -58.7 NC_004684.1 + 16425 0.66 0.544511
Target:  5'- -gGUcGGCCU---ACGACGUGCuGGCGCa -3'
miRNA:   3'- agCA-CCGGGacgUGUUGCACG-CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 16868 0.66 0.534125
Target:  5'- -gGUGGCCaguguCUGCGCcg-GUGUGGUGCa -3'
miRNA:   3'- agCACCGG-----GACGUGuugCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 42854 0.66 0.534125
Target:  5'- aUCGcGGCCCgGCACAccgcCGUaGaUGGCACc -3'
miRNA:   3'- -AGCaCCGGGaCGUGUu---GCA-C-GCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 5234 0.66 0.534125
Target:  5'- aCGcGaGCCCUGCGCAAgGccgGGCACg -3'
miRNA:   3'- aGCaC-CGGGACGUGUUgCacgCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 49506 0.67 0.527927
Target:  5'- -gGUGGCCUcgauguuccaccacuUGCgcucagGCGGCGUGCGGUc- -3'
miRNA:   3'- agCACCGGG---------------ACG------UGUUGCACGCCGug -5'
19238 3' -58.7 NC_004684.1 + 57684 0.67 0.524837
Target:  5'- -gGUGGCCaucggccaggcauggCUGCGCAACGagauggccaaggacUgGUGGCACg -3'
miRNA:   3'- agCACCGG---------------GACGUGUUGC--------------A-CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 46286 0.67 0.523809
Target:  5'- gUCGcggcGGCCgaGCGCGu--UGCGGCGCu -3'
miRNA:   3'- -AGCa---CCGGgaCGUGUugcACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 40108 0.67 0.523809
Target:  5'- cUCGUGGCCguagcggGCGCuGGCGgccuCGGCACc -3'
miRNA:   3'- -AGCACCGGga-----CGUG-UUGCac--GCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 35891 0.67 0.522782
Target:  5'- cCGUGGUCCccgacacUGCAU-ACGUGggcucCGGCACc -3'
miRNA:   3'- aGCACCGGG-------ACGUGuUGCAC-----GCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 36430 0.67 0.52073
Target:  5'- uUCGUGGuggacgacgaCCCUGCugGcgugaccaugguggACGUgagcaaguGCGGCACc -3'
miRNA:   3'- -AGCACC----------GGGACGugU--------------UGCA--------CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 58422 0.67 0.513571
Target:  5'- uUCGUgauGGCCUcGCACAGCaucuccaccgGCGGCAg -3'
miRNA:   3'- -AGCA---CCGGGaCGUGUUGca--------CGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 11383 0.67 0.513571
Target:  5'- gCGUGGUggUGCGCGACuUGCcGCGCg -3'
miRNA:   3'- aGCACCGggACGUGUUGcACGcCGUG- -5'
19238 3' -58.7 NC_004684.1 + 63154 0.67 0.503415
Target:  5'- gUGcGGCuCCUGCGCGcCGcGCaGGCGCa -3'
miRNA:   3'- aGCaCCG-GGACGUGUuGCaCG-CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 45226 0.67 0.503415
Target:  5'- cCGUGGCCCUGCGguGCuccuCGGUg- -3'
miRNA:   3'- aGCACCGGGACGUguUGcac-GCCGug -5'
19238 3' -58.7 NC_004684.1 + 18413 0.67 0.503415
Target:  5'- uUCGgcGGCCCggcggGCGCAcCG-GCGGC-Cg -3'
miRNA:   3'- -AGCa-CCGGGa----CGUGUuGCaCGCCGuG- -5'
19238 3' -58.7 NC_004684.1 + 6682 0.67 0.500386
Target:  5'- -aGUGG-CCUGCACAGgucgaccuggccacCGU-CGGCGCg -3'
miRNA:   3'- agCACCgGGACGUGUU--------------GCAcGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 46201 0.67 0.493348
Target:  5'- --uUGGCCC-GgAUAACGUGUGGC-Cg -3'
miRNA:   3'- agcACCGGGaCgUGUUGCACGCCGuG- -5'
19238 3' -58.7 NC_004684.1 + 18444 0.67 0.493348
Target:  5'- aCGUGGCUCccgaGCAgGACGa-CGGCACc -3'
miRNA:   3'- aGCACCGGGa---CGUgUUGCacGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 201 0.67 0.493348
Target:  5'- -gGUGGCCCUG-GCAACGcUGa-GCACc -3'
miRNA:   3'- agCACCGGGACgUGUUGC-ACgcCGUG- -5'
19238 3' -58.7 NC_004684.1 + 12277 0.67 0.483374
Target:  5'- aUCGaGGCCCgugcUGCGCAGCGcGCcaacgguggaGGUACg -3'
miRNA:   3'- -AGCaCCGGG----ACGUGUUGCaCG----------CCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.