miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 5' -55.7 NC_004684.1 + 28076 0.68 0.644953
Target:  5'- gGuGUGGCCGGGcCGcCGCGcgacccgcaccGGGuGGUGCg -3'
miRNA:   3'- aC-CACCGGCUC-GCaGCGU-----------UUC-UCACG- -5'
19238 5' -55.7 NC_004684.1 + 63143 0.68 0.643868
Target:  5'- gUGGUGGCCGAgugcggcuccugcGCGcCGCGcAGGcgcaUGCa -3'
miRNA:   3'- -ACCACCGGCU-------------CGCaGCGUuUCUc---ACG- -5'
19238 5' -55.7 NC_004684.1 + 1689 0.68 0.634101
Target:  5'- ---aGGCCGAGCuGgcgCGCAucGAGcGCa -3'
miRNA:   3'- accaCCGGCUCG-Ca--GCGUuuCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 57007 0.68 0.623248
Target:  5'- cGG-GGaCGAGCG-CGCcaucGGGGUGCg -3'
miRNA:   3'- aCCaCCgGCUCGCaGCGuu--UCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 3854 0.68 0.612402
Target:  5'- aGGaGGCCGAGCGccaCGCccgcGAGcUGCg -3'
miRNA:   3'- aCCaCCGGCUCGCa--GCGuuu-CUC-ACG- -5'
19238 5' -55.7 NC_004684.1 + 35900 0.68 0.612402
Target:  5'- cGGUcgcGGCCaGGUGgacCGCAAAGAGgucGCg -3'
miRNA:   3'- aCCA---CCGGcUCGCa--GCGUUUCUCa--CG- -5'
19238 5' -55.7 NC_004684.1 + 27715 0.68 0.612402
Target:  5'- cGGcGGCCGAGCGcgaGCAc-GAG-GCa -3'
miRNA:   3'- aCCaCCGGCUCGCag-CGUuuCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 63517 0.68 0.612402
Target:  5'- gGGcGGCCuGGCGUCGCAGcucgcGGGcGUGg -3'
miRNA:   3'- aCCaCCGGcUCGCAGCGUU-----UCU-CACg -5'
19238 5' -55.7 NC_004684.1 + 16514 0.68 0.612402
Target:  5'- aGGU-GCCGuauGCGcCGCAGuccuGGGGUGUg -3'
miRNA:   3'- aCCAcCGGCu--CGCaGCGUU----UCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 7319 0.68 0.601573
Target:  5'- cGGccaUGGCCGAcGCGU-GCucGGuGUGCa -3'
miRNA:   3'- aCC---ACCGGCU-CGCAgCGuuUCuCACG- -5'
19238 5' -55.7 NC_004684.1 + 46689 0.68 0.601573
Target:  5'- cGGUGGCgGuGCGguggCGCGcccuGUGCg -3'
miRNA:   3'- aCCACCGgCuCGCa---GCGUuucuCACG- -5'
19238 5' -55.7 NC_004684.1 + 6488 0.68 0.589691
Target:  5'- -cGUGGCCGAGaugGUCGaugaacuggaggcCGAGGAGgUGCg -3'
miRNA:   3'- acCACCGGCUCg--CAGC-------------GUUUCUC-ACG- -5'
19238 5' -55.7 NC_004684.1 + 35399 0.69 0.58
Target:  5'- cUGGUGGCCGGaugaGcCGCcGAGGAGcGCg -3'
miRNA:   3'- -ACCACCGGCUcg--CaGCG-UUUCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 57304 0.69 0.569272
Target:  5'- gGuGUGGCUGAGCacccggCGCAccacGGGGGUGUc -3'
miRNA:   3'- aC-CACCGGCUCGca----GCGU----UUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 11370 0.69 0.569272
Target:  5'- gUGGUGGCCaGcAGCGUgGU----GGUGCg -3'
miRNA:   3'- -ACCACCGG-C-UCGCAgCGuuucUCACG- -5'
19238 5' -55.7 NC_004684.1 + 1952 0.69 0.569272
Target:  5'- cGGUGGCCGcGCGcCGCAcgccAGcGCa -3'
miRNA:   3'- aCCACCGGCuCGCaGCGUuuc-UCaCG- -5'
19238 5' -55.7 NC_004684.1 + 46116 0.69 0.558594
Target:  5'- ---cGGCCGGGCG-CGCGugccGGGGUGg -3'
miRNA:   3'- accaCCGGCUCGCaGCGUu---UCUCACg -5'
19238 5' -55.7 NC_004684.1 + 64865 0.69 0.552214
Target:  5'- aGGUGcgcagcguccgcaguGCCGGGCGUCGUu--GAG-GCc -3'
miRNA:   3'- aCCAC---------------CGGCUCGCAGCGuuuCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 47036 0.69 0.547973
Target:  5'- gGGUGGCCu-GCG-CGguGAcGGUGCa -3'
miRNA:   3'- aCCACCGGcuCGCaGCguUUcUCACG- -5'
19238 5' -55.7 NC_004684.1 + 42211 0.69 0.537417
Target:  5'- cUGGUGGCCGAcguggccgccgGUGUCggcaccggcGCGAAGAcGUGg -3'
miRNA:   3'- -ACCACCGGCU-----------CGCAG---------CGUUUCU-CACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.