miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19239 3' -51.2 NC_004684.1 + 67224 0.66 0.942019
Target:  5'- aCGGUGAagGUGAacuUGGcg-GCCAUGGUg- -3'
miRNA:   3'- -GCCGCU--CACU---GCCaaaUGGUACCAau -5'
19239 3' -51.2 NC_004684.1 + 57360 0.66 0.942019
Target:  5'- cCGGUGAG-GGCGGggucUUUugCGcGGUUAc -3'
miRNA:   3'- -GCCGCUCaCUGCC----AAAugGUaCCAAU- -5'
19239 3' -51.2 NC_004684.1 + 54630 0.66 0.942019
Target:  5'- gCGcGCGAG-GACGGggUGuuGUGGg-- -3'
miRNA:   3'- -GC-CGCUCaCUGCCaaAUggUACCaau -5'
19239 3' -51.2 NC_004684.1 + 46681 0.66 0.936848
Target:  5'- uGGCGuugcGGUGGCGGU--GCgGUGGc-- -3'
miRNA:   3'- gCCGC----UCACUGCCAaaUGgUACCaau -5'
19239 3' -51.2 NC_004684.1 + 63941 0.66 0.931392
Target:  5'- gGGCGA--GACGGcgaacACCGUGGUg- -3'
miRNA:   3'- gCCGCUcaCUGCCaaa--UGGUACCAau -5'
19239 3' -51.2 NC_004684.1 + 62740 0.66 0.931392
Target:  5'- -cGUGGGUGcUGGgacgUGCCAUGGUg- -3'
miRNA:   3'- gcCGCUCACuGCCaa--AUGGUACCAau -5'
19239 3' -51.2 NC_004684.1 + 43591 0.67 0.893396
Target:  5'- aCGGUGGGUGuuGCGGUUgcggugaacagcccgGCCAcGGUg- -3'
miRNA:   3'- -GCCGCUCAC--UGCCAAa--------------UGGUaCCAau -5'
19239 3' -51.2 NC_004684.1 + 9097 0.67 0.885235
Target:  5'- aGGCccGUGACGcGUUcgACCGUGGg-- -3'
miRNA:   3'- gCCGcuCACUGC-CAAa-UGGUACCaau -5'
19239 3' -51.2 NC_004684.1 + 60274 0.69 0.826084
Target:  5'- uCGGCG-GUGGCGGUUg--CGUGGc-- -3'
miRNA:   3'- -GCCGCuCACUGCCAAaugGUACCaau -5'
19239 3' -51.2 NC_004684.1 + 66183 0.7 0.767071
Target:  5'- cCGGUG-GUGGUGGUggugGCCAUGGUc- -3'
miRNA:   3'- -GCCGCuCACUGCCAaa--UGGUACCAau -5'
19239 3' -51.2 NC_004684.1 + 40736 0.72 0.658514
Target:  5'- gCGGCGGG-GGCGGUg-GCgGUGGUg- -3'
miRNA:   3'- -GCCGCUCaCUGCCAaaUGgUACCAau -5'
19239 3' -51.2 NC_004684.1 + 5407 0.74 0.525504
Target:  5'- gCGGCGGGUG-CGGgugGCuCAUGGUg- -3'
miRNA:   3'- -GCCGCUCACuGCCaaaUG-GUACCAau -5'
19239 3' -51.2 NC_004684.1 + 55501 1.08 0.003948
Target:  5'- aCGGCGAGUGACGGUUUACCAUGGUUAc -3'
miRNA:   3'- -GCCGCUCACUGCCAAAUGGUACCAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.