Results 21 - 40 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19239 | 5' | -56.2 | NC_004684.1 | + | 57857 | 0.66 | 0.725741 |
Target: 5'- -cCAACCgGCGcaccAGCUCGCGgucggaaGCUGGCg -3' miRNA: 3'- cuGUUGG-UGC----UUGAGCGCgg-----CGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 64438 | 0.66 | 0.725741 |
Target: 5'- cGAUggUCuCGAugUgCGCGCCGgaCUGGUc -3' miRNA: 3'- -CUGuuGGuGCUugA-GCGCGGC--GACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 64633 | 0.66 | 0.725741 |
Target: 5'- gGAC-ACCugGAacguccACUCGaCGCCGaacgugUGGCc -3' miRNA: 3'- -CUGuUGGugCU------UGAGC-GCGGCg-----ACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 36212 | 0.66 | 0.725741 |
Target: 5'- uGCAGCUGCGcAGCguggccacCGCcgagaCCGCUGGCg -3' miRNA: 3'- cUGUUGGUGC-UUGa-------GCGc----GGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 58661 | 0.66 | 0.724701 |
Target: 5'- cGCGGCgGCGAACaucgggaUCaGCGCCGCcaUGGa -3' miRNA: 3'- cUGUUGgUGCUUG-------AG-CGCGGCG--ACCg -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 62605 | 0.66 | 0.715297 |
Target: 5'- cGGCcACCGCGccgagGCGCuUGCUGGCg -3' miRNA: 3'- -CUGuUGGUGCuugagCGCG-GCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 31460 | 0.66 | 0.715297 |
Target: 5'- gGACGugucauuuCCGCG----CGCGCUGCUGGUg -3' miRNA: 3'- -CUGUu-------GGUGCuugaGCGCGGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 39664 | 0.66 | 0.715297 |
Target: 5'- cGGCcuCCGCGugcCUCGUGCuCGCgcucGGCc -3' miRNA: 3'- -CUGuuGGUGCuu-GAGCGCG-GCGa---CCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 21044 | 0.66 | 0.715297 |
Target: 5'- cGACGACCACcacgcucccaUCGUGUucgccagccuccagaCGCUGGCg -3' miRNA: 3'- -CUGUUGGUGcuug------AGCGCG---------------GCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 55426 | 0.66 | 0.715297 |
Target: 5'- -cCggUCGCGGugU-GCGCCGCaGGUg -3' miRNA: 3'- cuGuuGGUGCUugAgCGCGGCGaCCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 1698 | 0.66 | 0.715297 |
Target: 5'- uGGC-GCgCAuCGAGCgcaagaaGCGCCuGCUGGCg -3' miRNA: 3'- -CUGuUG-GU-GCUUGag-----CGCGG-CGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 40164 | 0.66 | 0.704773 |
Target: 5'- gGACGGCCuugcuggcgGCGaAGCUCauGCGCUGCUcGCu -3' miRNA: 3'- -CUGUUGG---------UGC-UUGAG--CGCGGCGAcCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 27058 | 0.66 | 0.704773 |
Target: 5'- aGCGACCugcccagcgcCGAGgUCGUGCCuGCcgGGCg -3' miRNA: 3'- cUGUUGGu---------GCUUgAGCGCGG-CGa-CCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 35966 | 0.66 | 0.704773 |
Target: 5'- cGGCGucucccaguacGCCACGuuCUUGgGCgCGUUGGCc -3' miRNA: 3'- -CUGU-----------UGGUGCuuGAGCgCG-GCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 58867 | 0.66 | 0.704773 |
Target: 5'- cGAuCAGCCGCG-ACUUcUGgCGUUGGCg -3' miRNA: 3'- -CU-GUUGGUGCuUGAGcGCgGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 18265 | 0.66 | 0.704773 |
Target: 5'- cGGCAACggCACGcccGGC-CGC-CUGCUGGCa -3' miRNA: 3'- -CUGUUG--GUGC---UUGaGCGcGGCGACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 58092 | 0.66 | 0.704773 |
Target: 5'- -uCGACCGgGAg--CGCGCCGagcaUGGCc -3' miRNA: 3'- cuGUUGGUgCUugaGCGCGGCg---ACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 7727 | 0.66 | 0.704773 |
Target: 5'- cGugAGCCACcuGAucgguaucGC-CGCGCCGCUGuCg -3' miRNA: 3'- -CugUUGGUG--CU--------UGaGCGCGGCGACcG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 26424 | 0.66 | 0.704773 |
Target: 5'- uGGCAGCg--GggUUCGcCGCCGgUGGCc -3' miRNA: 3'- -CUGUUGgugCuuGAGC-GCGGCgACCG- -5' |
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19239 | 5' | -56.2 | NC_004684.1 | + | 24599 | 0.66 | 0.704773 |
Target: 5'- uGACGACaGCGGACguggCGCGCaug-GGCg -3' miRNA: 3'- -CUGUUGgUGCUUGa---GCGCGgcgaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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