miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1924 3' -54.7 NC_001347.2 + 193112 0.66 0.983967
Target:  5'- uCGGCGGccacggcgucUUC-CUC-CUCGUCGUcGCCGc -3'
miRNA:   3'- -GCUGCC----------AAGaGAGcGAGCAGUA-CGGC- -5'
1924 3' -54.7 NC_001347.2 + 112178 0.67 0.972984
Target:  5'- cCGugGGUguuUCUCcucCGCcacUCGUCAgcucGCCGg -3'
miRNA:   3'- -GCugCCA---AGAGa--GCG---AGCAGUa---CGGC- -5'
1924 3' -54.7 NC_001347.2 + 210494 0.67 0.97272
Target:  5'- gCGGCGGUcggUCcaggucaacggcgUUUCGCcgCGUCAUGaCCGa -3'
miRNA:   3'- -GCUGCCA---AG-------------AGAGCGa-GCAGUAC-GGC- -5'
1924 3' -54.7 NC_001347.2 + 115051 0.67 0.970257
Target:  5'- gCGACGGUgUUUUCGC-CGUCgGUGCa- -3'
miRNA:   3'- -GCUGCCAaGAGAGCGaGCAG-UACGgc -5'
1924 3' -54.7 NC_001347.2 + 198094 0.67 0.967338
Target:  5'- gCGACGGUgacggUCcCGCUCGUCGcGuuGa -3'
miRNA:   3'- -GCUGCCAag---AGaGCGAGCAGUaCggC- -5'
1924 3' -54.7 NC_001347.2 + 134895 0.67 0.960904
Target:  5'- gGACGGUcguggUCUC-CUCGgccCGUGCCGg -3'
miRNA:   3'- gCUGCCAag---AGAGcGAGCa--GUACGGC- -5'
1924 3' -54.7 NC_001347.2 + 134555 0.68 0.945523
Target:  5'- uCGACGccauuUUCUCUCGUcCGcCAUGUCGg -3'
miRNA:   3'- -GCUGCc----AAGAGAGCGaGCaGUACGGC- -5'
1924 3' -54.7 NC_001347.2 + 111512 0.68 0.945523
Target:  5'- -aACGGggCUCUcaCGCUCGUCAUcCCc -3'
miRNA:   3'- gcUGCCaaGAGA--GCGAGCAGUAcGGc -5'
1924 3' -54.7 NC_001347.2 + 87777 0.69 0.931685
Target:  5'- aGGCGGUagCUCUCG-UCGcUCAUGUCc -3'
miRNA:   3'- gCUGCCAa-GAGAGCgAGC-AGUACGGc -5'
1924 3' -54.7 NC_001347.2 + 173546 0.69 0.915264
Target:  5'- gCGGCGGUgguggcggcagccUCUCuUCGCUgGcCAaUGCCGg -3'
miRNA:   3'- -GCUGCCA-------------AGAG-AGCGAgCaGU-ACGGC- -5'
1924 3' -54.7 NC_001347.2 + 191945 0.7 0.871109
Target:  5'- -cGCGGUUUUCUCGCccaccucgcUCGUCGcUGUCGc -3'
miRNA:   3'- gcUGCCAAGAGAGCG---------AGCAGU-ACGGC- -5'
1924 3' -54.7 NC_001347.2 + 192717 0.73 0.75347
Target:  5'- aCGACGGg-CUCUCGCgcCGUCAacagcgugccuuuUGCCGc -3'
miRNA:   3'- -GCUGCCaaGAGAGCGa-GCAGU-------------ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.