miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1924 5' -50.6 NC_001347.2 + 144466 0.66 0.999196
Target:  5'- cCCGAgGgcgaggcuauucaccUGcGUGGACGGGAGgcGAUGu -3'
miRNA:   3'- aGGCUgU---------------AC-CGCCUGCUCUCuuUUAC- -5'
1924 5' -50.6 NC_001347.2 + 75242 0.66 0.998942
Target:  5'- gUCCGugAUGGCGucCGAGucgucauGGUGg -3'
miRNA:   3'- -AGGCugUACCGCcuGCUCucuu---UUAC- -5'
1924 5' -50.6 NC_001347.2 + 39848 0.66 0.998942
Target:  5'- uUCCGggccGCGUGGUGGGuccuCGAGGGGcggggGGGUGu -3'
miRNA:   3'- -AGGC----UGUACCGCCU----GCUCUCU-----UUUAC- -5'
1924 5' -50.6 NC_001347.2 + 29750 0.66 0.99888
Target:  5'- --aGugGUGGCGGcagccacggaggagACGAGAGAAc--- -3'
miRNA:   3'- aggCugUACCGCC--------------UGCUCUCUUuuac -5'
1924 5' -50.6 NC_001347.2 + 115395 0.66 0.998722
Target:  5'- aUCCaGAUccuUGGUGGgcucGCGGGAGAAGAa- -3'
miRNA:   3'- -AGG-CUGu--ACCGCC----UGCUCUCUUUUac -5'
1924 5' -50.6 NC_001347.2 + 135221 0.66 0.998722
Target:  5'- cCCGGCugGGCGGcCGAuGGGggGAg- -3'
miRNA:   3'- aGGCUGuaCCGCCuGCU-CUCuuUUac -5'
1924 5' -50.6 NC_001347.2 + 65715 0.66 0.998698
Target:  5'- -gCGACAcgguggcGGCGGugGAGGGcgcgcggcaacucGAGAUGg -3'
miRNA:   3'- agGCUGUa------CCGCCugCUCUC-------------UUUUAC- -5'
1924 5' -50.6 NC_001347.2 + 135397 0.66 0.998464
Target:  5'- gUCaCGAC-UGGCGGccggacccuCGAGAGggGGg- -3'
miRNA:   3'- -AG-GCUGuACCGCCu--------GCUCUCuuUUac -5'
1924 5' -50.6 NC_001347.2 + 140586 0.66 0.998163
Target:  5'- gCUGGCggggGUGGUGGACGAGAcguGAGcgGg -3'
miRNA:   3'- aGGCUG----UACCGCCUGCUCUc--UUUuaC- -5'
1924 5' -50.6 NC_001347.2 + 17784 0.67 0.997814
Target:  5'- cUCCGACA--GCGcGACGAGcgcugcGAAGAUGc -3'
miRNA:   3'- -AGGCUGUacCGC-CUGCUCu-----CUUUUAC- -5'
1924 5' -50.6 NC_001347.2 + 140644 0.67 0.997279
Target:  5'- gUCGugGUGGUGGGggugguggggauucCGGGGGAAuGAUGg -3'
miRNA:   3'- aGGCugUACCGCCU--------------GCUCUCUU-UUAC- -5'
1924 5' -50.6 NC_001347.2 + 144937 0.67 0.995816
Target:  5'- aCCaaGACGUGGUGGACGuGGGuGAu-- -3'
miRNA:   3'- aGG--CUGUACCGCCUGCuCUCuUUuac -5'
1924 5' -50.6 NC_001347.2 + 142506 0.68 0.995133
Target:  5'- cUUCGGCGUgcccGGCGaGACGGGAGGu---- -3'
miRNA:   3'- -AGGCUGUA----CCGC-CUGCUCUCUuuuac -5'
1924 5' -50.6 NC_001347.2 + 40406 0.68 0.995133
Target:  5'- gCCG-CGUGGUGGGuccuCGAGGGAGuguUGa -3'
miRNA:   3'- aGGCuGUACCGCCU----GCUCUCUUuu-AC- -5'
1924 5' -50.6 NC_001347.2 + 135962 0.68 0.994362
Target:  5'- cCCGGCcgGGCcgucGGAUGGGGGGGu--- -3'
miRNA:   3'- aGGCUGuaCCG----CCUGCUCUCUUuuac -5'
1924 5' -50.6 NC_001347.2 + 169818 0.68 0.993495
Target:  5'- aUCCGGCugacGCGGACGAG-GAAc--- -3'
miRNA:   3'- -AGGCUGuac-CGCCUGCUCuCUUuuac -5'
1924 5' -50.6 NC_001347.2 + 159259 0.68 0.992525
Target:  5'- aCCGugAUaGGCGG-CGAGGcGAAAcUGg -3'
miRNA:   3'- aGGCugUA-CCGCCuGCUCU-CUUUuAC- -5'
1924 5' -50.6 NC_001347.2 + 188232 0.68 0.992525
Target:  5'- -gCGGCAgaaacgGGUGGACGAcGAGguGGUGc -3'
miRNA:   3'- agGCUGUa-----CCGCCUGCU-CUCuuUUAC- -5'
1924 5' -50.6 NC_001347.2 + 197557 0.68 0.991443
Target:  5'- gCCGGCGUGGCGGcCGAcGGcAGcGUGc -3'
miRNA:   3'- aGGCUGUACCGCCuGCUcUC-UUuUAC- -5'
1924 5' -50.6 NC_001347.2 + 160417 0.69 0.990241
Target:  5'- gCUG-CAUGGCGGGCcauuGGGuGggGGUGa -3'
miRNA:   3'- aGGCuGUACCGCCUG----CUCuCuuUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.