miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19240 3' -61.7 NC_004684.1 + 22353 0.66 0.404286
Target:  5'- -gGUGGcGGCGGCgGCGgcggucgcGCuGGCGGUg -3'
miRNA:   3'- gaCACCcUCGCCG-CGUa-------CGuCCGCCA- -5'
19240 3' -61.7 NC_004684.1 + 63695 0.66 0.395519
Target:  5'- cCUGUGGuuGUGGuUGuCGUGCgggAGGCGGUg -3'
miRNA:   3'- -GACACCcuCGCC-GC-GUACG---UCCGCCA- -5'
19240 3' -61.7 NC_004684.1 + 39173 0.66 0.386876
Target:  5'- -gGUGGGcGGCcagguaGCGCAgGCuGGCGGUg -3'
miRNA:   3'- gaCACCC-UCGc-----CGCGUaCGuCCGCCA- -5'
19240 3' -61.7 NC_004684.1 + 19833 0.66 0.386018
Target:  5'- gUGUGacGGCGGCGCAUGCcGGUugccgcgcaccguGGUg -3'
miRNA:   3'- gACACccUCGCCGCGUACGuCCG-------------CCA- -5'
19240 3' -61.7 NC_004684.1 + 6160 0.67 0.361704
Target:  5'- ---cGGcGGCGGCcaGCGUGC-GGCGGUa -3'
miRNA:   3'- gacaCCcUCGCCG--CGUACGuCCGCCA- -5'
19240 3' -61.7 NC_004684.1 + 19114 0.67 0.353571
Target:  5'- -gGUGGGA-CGuGCGCAUGguGGCc-- -3'
miRNA:   3'- gaCACCCUcGC-CGCGUACguCCGcca -5'
19240 3' -61.7 NC_004684.1 + 24497 0.67 0.352765
Target:  5'- ---cGGGGGCGGUGCc-GCAgggccgcgcguucGGCGGUg -3'
miRNA:   3'- gacaCCCUCGCCGCGuaCGU-------------CCGCCA- -5'
19240 3' -61.7 NC_004684.1 + 45305 0.67 0.337695
Target:  5'- gCUGUcGuuGGCGGCGCGUGCGGuguccCGGUa -3'
miRNA:   3'- -GACA-CccUCGCCGCGUACGUCc----GCCA- -5'
19240 3' -61.7 NC_004684.1 + 33888 0.68 0.314866
Target:  5'- -gGUGcGGGCGGUGCcgGUGGGCGcGg -3'
miRNA:   3'- gaCACcCUCGCCGCGuaCGUCCGC-Ca -5'
19240 3' -61.7 NC_004684.1 + 4307 0.68 0.30752
Target:  5'- -aGUGGGAcGCGGUGCAc-CGGGCGc- -3'
miRNA:   3'- gaCACCCU-CGCCGCGUacGUCCGCca -5'
19240 3' -61.7 NC_004684.1 + 33810 0.68 0.30752
Target:  5'- ---aGcGGuuCGGCGUcgGCGGGCGGUg -3'
miRNA:   3'- gacaC-CCucGCCGCGuaCGUCCGCCA- -5'
19240 3' -61.7 NC_004684.1 + 49509 0.68 0.300306
Target:  5'- -cGUcGGGgguguAGCGGCccaGCGUGCAcccGGCGGUg -3'
miRNA:   3'- gaCA-CCC-----UCGCCG---CGUACGU---CCGCCA- -5'
19240 3' -61.7 NC_004684.1 + 48048 0.68 0.300306
Target:  5'- ------aGGCGGCGCAUGCGgauGGCGGUu -3'
miRNA:   3'- gacacccUCGCCGCGUACGU---CCGCCA- -5'
19240 3' -61.7 NC_004684.1 + 8515 0.69 0.27945
Target:  5'- gUGcUGGGAuuGUGGCGUgcuGUGCGGGcCGGa -3'
miRNA:   3'- gAC-ACCCU--CGCCGCG---UACGUCC-GCCa -5'
19240 3' -61.7 NC_004684.1 + 5401 0.69 0.272759
Target:  5'- uUGUGc--GCGGCGgGUGCGGGUGGc -3'
miRNA:   3'- gACACccuCGCCGCgUACGUCCGCCa -5'
19240 3' -61.7 NC_004684.1 + 27790 0.7 0.223798
Target:  5'- -aGUGGGAGCGcUGCGUGguGGCc-- -3'
miRNA:   3'- gaCACCCUCGCcGCGUACguCCGcca -5'
19240 3' -61.7 NC_004684.1 + 64932 0.7 0.212785
Target:  5'- -gGUGGcGGCGGUgaGCGccugGCGGGCGGUg -3'
miRNA:   3'- gaCACCcUCGCCG--CGUa---CGUCCGCCA- -5'
19240 3' -61.7 NC_004684.1 + 56215 1.06 0.000455
Target:  5'- gCUGUGGGAGCGGCGCAUGCAGGCGGUc -3'
miRNA:   3'- -GACACCCUCGCCGCGUACGUCCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.