miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19240 5' -55.1 NC_004684.1 + 57913 0.68 0.702943
Target:  5'- -gGugGCCGGGcUGACCg---CCGAu -3'
miRNA:   3'- cgUugCGGCCCuACUGGaagaGGCUc -5'
19240 5' -55.1 NC_004684.1 + 42438 0.68 0.690204
Target:  5'- aGCGugGCCGGGucggcaccgagGAaCUUCUCgGGGu -3'
miRNA:   3'- -CGUugCGGCCCua---------CUgGAAGAGgCUC- -5'
19240 5' -55.1 NC_004684.1 + 64482 0.68 0.681668
Target:  5'- aGCAG-GCCGGuGGUGGCCUcgUUCUGGa -3'
miRNA:   3'- -CGUUgCGGCC-CUACUGGAa-GAGGCUc -5'
19240 5' -55.1 NC_004684.1 + 66879 0.68 0.681668
Target:  5'- uCAGCGCCGGuGgcGACCUUCggCgCGGc -3'
miRNA:   3'- cGUUGCGGCC-CuaCUGGAAGa-G-GCUc -5'
19240 5' -55.1 NC_004684.1 + 45938 0.68 0.670957
Target:  5'- -gGugGUCGGGGUGuCCU-CUCCGu- -3'
miRNA:   3'- cgUugCGGCCCUACuGGAaGAGGCuc -5'
19240 5' -55.1 NC_004684.1 + 729 0.68 0.66021
Target:  5'- gGCAcCGCCGGuGAccgGGCCgccgCCGAGg -3'
miRNA:   3'- -CGUuGCGGCC-CUa--CUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 63419 0.68 0.649439
Target:  5'- uGCAcACcgGCCaGGAUGACCUgg-CCGGGg -3'
miRNA:   3'- -CGU-UG--CGGcCCUACUGGAagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 47028 0.69 0.625702
Target:  5'- -gAACGUCGGGGUGGCCUgcgCggugacggugcaCCGGGc -3'
miRNA:   3'- cgUUGCGGCCCUACUGGAa--Ga-----------GGCUC- -5'
19240 5' -55.1 NC_004684.1 + 32548 0.69 0.617071
Target:  5'- --cGCGCCGGGcgAUGACCUggagaUUCGGGc -3'
miRNA:   3'- cguUGCGGCCC--UACUGGAag---AGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 36998 0.69 0.617071
Target:  5'- gGCAGCGCCGGGAUGcGCgUggggUCCa-- -3'
miRNA:   3'- -CGUUGCGGCCCUAC-UGgAag--AGGcuc -5'
19240 5' -55.1 NC_004684.1 + 27425 0.7 0.584816
Target:  5'- cGgAGCGCagGGGAUGGCg--CUCCGGGc -3'
miRNA:   3'- -CgUUGCGg-CCCUACUGgaaGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 58538 0.71 0.521526
Target:  5'- gGCGGCGuuGGaGAUGcgagcgGCCUUCUCCu-- -3'
miRNA:   3'- -CGUUGCggCC-CUAC------UGGAAGAGGcuc -5'
19240 5' -55.1 NC_004684.1 + 450 0.71 0.480833
Target:  5'- gGCGagaucGCGCCGGa--GGCCUUCgCCGAGg -3'
miRNA:   3'- -CGU-----UGCGGCCcuaCUGGAAGaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 53679 0.72 0.4709
Target:  5'- aCAGCGCCugggucGGGAUGAUCUUCggcgugcCCGAa -3'
miRNA:   3'- cGUUGCGG------CCCUACUGGAAGa------GGCUc -5'
19240 5' -55.1 NC_004684.1 + 9937 0.72 0.422891
Target:  5'- -uGugGCCGGGcUGACCaugCUCUGGGu -3'
miRNA:   3'- cgUugCGGCCCuACUGGaa-GAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 27116 0.75 0.316032
Target:  5'- aCGGCGCggucaaCGGGGUGGCCUUCUacaaggucgaccgccCCGAGa -3'
miRNA:   3'- cGUUGCG------GCCCUACUGGAAGA---------------GGCUC- -5'
19240 5' -55.1 NC_004684.1 + 48657 0.75 0.312994
Target:  5'- uGCAccGCGCCGGaGA-GGCCUUCaCCGGGc -3'
miRNA:   3'- -CGU--UGCGGCC-CUaCUGGAAGaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 62859 0.75 0.298138
Target:  5'- aCAGCGCCGGGGUGAUUUgaaCcCCGGGu -3'
miRNA:   3'- cGUUGCGGCCCUACUGGAa--GaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 19003 0.75 0.29379
Target:  5'- cCAACGCCGGGGUGcugaucgugcaccacACCggcaagcaCUCCGAGa -3'
miRNA:   3'- cGUUGCGGCCCUAC---------------UGGaa------GAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 4513 0.77 0.232031
Target:  5'- gGCAugGCCGGGAU--CCUgUUCCGGGg -3'
miRNA:   3'- -CGUugCGGCCCUAcuGGAaGAGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.