miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19241 3' -56.6 NC_004684.1 + 17348 0.68 0.543004
Target:  5'- uUCCU----GGCCUGGAGC-C-AGGCa -3'
miRNA:   3'- uAGGAguuuCCGGACCUCGuGcUCCG- -5'
19241 3' -56.6 NC_004684.1 + 19458 0.68 0.543004
Target:  5'- -gCCaCcAAGGCCUGGAaGCAgaagguggcCGAGGCc -3'
miRNA:   3'- uaGGaGuUUCCGGACCU-CGU---------GCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 13756 0.68 0.543004
Target:  5'- gGUgCUCAAcGGCCUGGcGCuCcAGGCg -3'
miRNA:   3'- -UAgGAGUUuCCGGACCuCGuGcUCCG- -5'
19241 3' -56.6 NC_004684.1 + 23750 0.68 0.53242
Target:  5'- cUgCUCGGugcgcaguucGGGCCgUGGGGCGCGgcguuGGGCg -3'
miRNA:   3'- uAgGAGUU----------UCCGG-ACCUCGUGC-----UCCG- -5'
19241 3' -56.6 NC_004684.1 + 7208 0.68 0.521912
Target:  5'- cAUCCUgccAGGCCgcgucugGGAGCGCgugGAGGUg -3'
miRNA:   3'- -UAGGAguuUCCGGa------CCUCGUG---CUCCG- -5'
19241 3' -56.6 NC_004684.1 + 66856 0.68 0.521912
Target:  5'- -gCCUCGAccGCCUGGccAGCACGucagcgccgguGGCg -3'
miRNA:   3'- uaGGAGUUucCGGACC--UCGUGCu----------CCG- -5'
19241 3' -56.6 NC_004684.1 + 57644 0.68 0.517731
Target:  5'- -aCCUCGcguacaccccgauuGAGGCCUGGAccccacaGCAgGuGGCc -3'
miRNA:   3'- uaGGAGU--------------UUCCGGACCU-------CGUgCuCCG- -5'
19241 3' -56.6 NC_004684.1 + 11642 0.68 0.511484
Target:  5'- cGUCCUCugcGGGCC-GGuGCaACGGGGa -3'
miRNA:   3'- -UAGGAGuu-UCCGGaCCuCG-UGCUCCg -5'
19241 3' -56.6 NC_004684.1 + 31195 0.69 0.490897
Target:  5'- -gCCUCGuagAGGGCCUGGAagACGAccuGGCc -3'
miRNA:   3'- uaGGAGU---UUCCGGACCUcgUGCU---CCG- -5'
19241 3' -56.6 NC_004684.1 + 55602 0.69 0.490897
Target:  5'- cUCCaCGGuGGCCUGGucGGCccACGGGGCc -3'
miRNA:   3'- uAGGaGUUuCCGGACC--UCG--UGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 9462 0.69 0.490897
Target:  5'- uUCC----GGGCgCUGGAGCugGcGGGCa -3'
miRNA:   3'- uAGGaguuUCCG-GACCUCGugC-UCCG- -5'
19241 3' -56.6 NC_004684.1 + 8941 0.7 0.43164
Target:  5'- -gCCUCAGcGGGCagucgGGuccGGCACGGGGCc -3'
miRNA:   3'- uaGGAGUU-UCCGga---CC---UCGUGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 57226 0.7 0.430687
Target:  5'- cUCCUCGAGcgcgguggccagcGGCggCUGGcugAGCACGAGGUc -3'
miRNA:   3'- uAGGAGUUU-------------CCG--GACC---UCGUGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 54835 0.7 0.422172
Target:  5'- -gCCUgAcgugcGAGcGCCUGGAGCGCGucgaugucgguGGGCa -3'
miRNA:   3'- uaGGAgU-----UUC-CGGACCUCGUGC-----------UCCG- -5'
19241 3' -56.6 NC_004684.1 + 28260 0.7 0.403619
Target:  5'- -aCC-CGGccaGCCUGGuGCGCGAGGCc -3'
miRNA:   3'- uaGGaGUUuc-CGGACCuCGUGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 55807 0.71 0.394538
Target:  5'- gGUCCgguGAGcGCgUGcGAGCACGGGGUg -3'
miRNA:   3'- -UAGGaguUUC-CGgAC-CUCGUGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 23264 0.71 0.368101
Target:  5'- gGUgCUCAAcgacgcGGGCgaGGAGCGCGuGGUc -3'
miRNA:   3'- -UAgGAGUU------UCCGgaCCUCGUGCuCCG- -5'
19241 3' -56.6 NC_004684.1 + 15503 0.72 0.326813
Target:  5'- uUCCUgGAcaaggccgcccgGGGCCgGGcGCugGAGGCg -3'
miRNA:   3'- uAGGAgUU------------UCCGGaCCuCGugCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 56922 0.72 0.318979
Target:  5'- uGUCCUCcu--GCCUGGAGCGCGcccGGGa -3'
miRNA:   3'- -UAGGAGuuucCGGACCUCGUGC---UCCg -5'
19241 3' -56.6 NC_004684.1 + 44922 0.75 0.19636
Target:  5'- -gCCagGGAaccGGCCUGGAGCGCG-GGCg -3'
miRNA:   3'- uaGGagUUU---CCGGACCUCGUGCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.