miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19241 5' -62.3 NC_004684.1 + 60686 0.67 0.401866
Target:  5'- uCGGCUUGcuCGCGCCGAC---GGUGGc -3'
miRNA:   3'- -GCCGGACauGCGCGGCUGggcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 10565 0.67 0.401866
Target:  5'- aGGCCcugGCGUuccccGCCGAUCCGGcUGGu -3'
miRNA:   3'- gCCGGacaUGCG-----CGGCUGGGCCcACC- -5'
19241 5' -62.3 NC_004684.1 + 43416 0.67 0.401866
Target:  5'- aCGGCUUGaGCGaGCCG-UCCGGGUu- -3'
miRNA:   3'- -GCCGGACaUGCgCGGCuGGGCCCAcc -5'
19241 5' -62.3 NC_004684.1 + 28652 0.67 0.401866
Target:  5'- cCGaGCgUGUugGCGUCGuCCCGGuUGa -3'
miRNA:   3'- -GC-CGgACAugCGCGGCuGGGCCcACc -5'
19241 5' -62.3 NC_004684.1 + 6285 0.67 0.401866
Target:  5'- gCGGCgaaCUGUAgcCGCGUCGACC--GGUGGc -3'
miRNA:   3'- -GCCG---GACAU--GCGCGGCUGGgcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 17116 0.67 0.393394
Target:  5'- gGGCCUGgcgcugGCcaGCGaCGACCCcaaGGUGGu -3'
miRNA:   3'- gCCGGACa-----UG--CGCgGCUGGGc--CCACC- -5'
19241 5' -62.3 NC_004684.1 + 42915 0.67 0.393394
Target:  5'- cCGGCg-GUAgCGCGCUGAUCUGGaGcUGGa -3'
miRNA:   3'- -GCCGgaCAU-GCGCGGCUGGGCC-C-ACC- -5'
19241 5' -62.3 NC_004684.1 + 19697 0.67 0.385039
Target:  5'- aGGCCUGgcCGaGCCaaGACCUGGGa-- -3'
miRNA:   3'- gCCGGACauGCgCGG--CUGGGCCCacc -5'
19241 5' -62.3 NC_004684.1 + 19427 0.67 0.376803
Target:  5'- uCGGCCUcUGCgaaaccaccguGCGCCcauGCCCGGGcGGc -3'
miRNA:   3'- -GCCGGAcAUG-----------CGCGGc--UGGGCCCaCC- -5'
19241 5' -62.3 NC_004684.1 + 4049 0.67 0.376803
Target:  5'- uGGCCUaccgGCcauCGCCGGgugaCCGGGUGGu -3'
miRNA:   3'- gCCGGAca--UGc--GCGGCUg---GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 54847 0.67 0.376802
Target:  5'- aGcGCCUGgaGCGCGUCGAUgUcGGUGGg -3'
miRNA:   3'- gC-CGGACa-UGCGCGGCUGgGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 40656 0.67 0.37517
Target:  5'- gGGCCUGgccccgccaguCGCGCuCGGCCagcaaGGUGGc -3'
miRNA:   3'- gCCGGACau---------GCGCG-GCUGGgc---CCACC- -5'
19241 5' -62.3 NC_004684.1 + 44794 0.68 0.368686
Target:  5'- aCGaGUCUGUGagUGCGUCGuaguuguagUCCGGGUGGg -3'
miRNA:   3'- -GC-CGGACAU--GCGCGGCu--------GGGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 67025 0.68 0.368685
Target:  5'- uCGGCCagGU-CGCGCaUGGCCaucaGGGUGu -3'
miRNA:   3'- -GCCGGa-CAuGCGCG-GCUGGg---CCCACc -5'
19241 5' -62.3 NC_004684.1 + 25517 0.68 0.360689
Target:  5'- gCGGCUguucucgAC-CGCCGACgCCGGGUcGGu -3'
miRNA:   3'- -GCCGGaca----UGcGCGGCUG-GGCCCA-CC- -5'
19241 5' -62.3 NC_004684.1 + 5925 0.68 0.360689
Target:  5'- cCGG-CUGgcCGCGCUGGCcaCCGGGcGGu -3'
miRNA:   3'- -GCCgGACauGCGCGGCUG--GGCCCaCC- -5'
19241 5' -62.3 NC_004684.1 + 14050 0.68 0.35595
Target:  5'- cCGGCCgGUAccugguucCGCGCCaugcagaacgugaucGACCUGGG-GGu -3'
miRNA:   3'- -GCCGGaCAU--------GCGCGG---------------CUGGGCCCaCC- -5'
19241 5' -62.3 NC_004684.1 + 9202 0.68 0.352814
Target:  5'- gGGCgCaGUGgGCGCgUGA-CCGGGUGGg -3'
miRNA:   3'- gCCG-GaCAUgCGCG-GCUgGGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 47132 0.68 0.352814
Target:  5'- gGGCCggGaACGCGCCGGgCCGGa--- -3'
miRNA:   3'- gCCGGa-CaUGCGCGGCUgGGCCcacc -5'
19241 5' -62.3 NC_004684.1 + 42394 0.68 0.348148
Target:  5'- uCGGCCccgccgaccccaACGCGCCGACgCGGGccaagguaUGGg -3'
miRNA:   3'- -GCCGGaca---------UGCGCGGCUGgGCCC--------ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.