Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19242 | 3' | -58.2 | NC_004684.1 | + | 14212 | 0.7 | 0.375557 |
Target: 5'- gCGGCGCgGUCggccugUCCCCgGAgGCCUUCAc -3' miRNA: 3'- -GUUGCGgUAG------AGGGGgCUgUGGGAGU- -5' |
|||||||
19242 | 3' | -58.2 | NC_004684.1 | + | 3175 | 0.7 | 0.36711 |
Target: 5'- cCAACGCCGUgUCCCaggugucgauCCGGCACaCCggCAa -3' miRNA: 3'- -GUUGCGGUAgAGGG----------GGCUGUG-GGa-GU- -5' |
|||||||
19242 | 3' | -58.2 | NC_004684.1 | + | 17674 | 0.71 | 0.319223 |
Target: 5'- gCAugGCCGagUUCCCCGuggugaagggcuACACCCUCc -3' miRNA: 3'- -GUugCGGUagAGGGGGC------------UGUGGGAGu -5' |
|||||||
19242 | 3' | -58.2 | NC_004684.1 | + | 11078 | 0.71 | 0.319223 |
Target: 5'- gCAGCGCgGUCUCCacguCCCGGCGCgCCa-- -3' miRNA: 3'- -GUUGCGgUAGAGG----GGGCUGUG-GGagu -5' |
|||||||
19242 | 3' | -58.2 | NC_004684.1 | + | 36374 | 0.77 | 0.130296 |
Target: 5'- gCAACGCCGUCUaCCUCCaGGCACgCUCGc -3' miRNA: 3'- -GUUGCGGUAGA-GGGGG-CUGUGgGAGU- -5' |
|||||||
19242 | 3' | -58.2 | NC_004684.1 | + | 8081 | 0.78 | 0.126825 |
Target: 5'- cCAGCGCCAUCgaCCCCGACACCg--- -3' miRNA: 3'- -GUUGCGGUAGagGGGGCUGUGGgagu -5' |
|||||||
19242 | 3' | -58.2 | NC_004684.1 | + | 56565 | 1.08 | 0.000831 |
Target: 5'- uCAACGCCAUCUCCCCCGACACCCUCAa -3' miRNA: 3'- -GUUGCGGUAGAGGGGGCUGUGGGAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home